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We present allesfitter, a public and open-source python software for flexible and robust inference of stars and exoplanets given photometric and radial velocity data. Allesfitter offers a rich selection of orbital and transit/eclipse…

Earth and Planetary Astrophysics · Physics 2021-05-05 Maximilian N. Günther , Tansu Daylan

This paper describes an analytical modeling tool called Bitlet that can be used, in a parameterized fashion, to understand the affinity of workloads to processing-in-memory (PIM) as opposed to traditional computing. The tool uncovers…

Hardware Architecture · Computer Science 2019-10-24 Kunal Korgaonkar , Ronny Ronen , Anupam Chattopadhyay , Shahar Kvatinsky

We describe NumBAT, an open-source software tool for modelling stimulated Brillouin scattering in waveguides of arbitrary cross-section. It provides rapid calculation of optical and elastic dispersion relations, field profiles and gain with…

Near linear scaling fragment based quantum chemical calculations are becoming increasingly popular for treating large systems with high accuracy and is an active field of research. However, it remains difficult to set up these calculations…

Computational Engineering, Finance, and Science · Computer Science 2012-09-20 Casper Steinmann , Mikael W. Ibsen , Anne S. Hansen , Jan H. Jensen

We propose a method for inference in generalised linear mixed models (GLMMs) and several extensions of these models. First, we extend the GLMM by allowing the distribution of the random components to be non-Gaussian, that is, assuming an…

Methodology · Statistics 2021-07-27 Jeanett S. Pelck , Rodrigo Labouriau

The empirical Bayes normal means (EBNM) model is important to many areas of statistics, including (but not limited to) multiple testing, wavelet denoising, and gene expression analysis. There are several existing software packages that can…

Computation · Statistics 2024-04-02 Jason Willwerscheid , Peter Carbonetto , Matthew Stephens

Background: Data mining and analyzing of public Git software repositories is a growing research field. The tools used for studies that investigate a single project or a group of projects have been refined, but it is not clear whether the…

Software Engineering · Computer Science 2020-08-18 Adam Tutko , Austin Henley , Audris Mockus

We describe the \texttt{Imeall} package for the calculation and indexing of atomistic properties of grain boundaries in materials. The package provides a structured database for the storage of atomistic structures and their associated…

Materials Science · Physics 2018-08-15 Henry Lambert , Adam Fekete , James R Kermode , A. De Vita

We introduce GAMSEL (Generalized Additive Model Selection), a penalized likelihood approach for fitting sparse generalized additive models in high dimension. Our method interpolates between null, linear and additive models by allowing the…

Machine Learning · Statistics 2015-06-18 Alexandra Chouldechova , Trevor Hastie

Inference on time series data is a common requirement in many scientific disciplines and internet of things (IoT) applications, yet there are few resources available to domain scientists to easily, robustly, and repeatably build such…

Mathematical Software · Computer Science 2016-09-16 Brett Naul , Stéfan van der Walt , Arien Crellin-Quick , Joshua S. Bloom , Fernando Pérez

This paper presents OpenGridGym, an open-source Python-based package that allows for seamless integration of distribution market simulation with state-of-the-art artificial intelligence (AI) decision-making algorithms. We present the…

Artificial Intelligence · Computer Science 2022-03-10 Rayan El Helou , Kiyeob Lee , Dongqi Wu , Le Xie , Srinivas Shakkottai , Vijay Subramanian

World models are progressively being employed across diverse fields, extending from basic environment simulation to complex scenario construction. However, existing models are mainly trained on domain-specific states and actions, and…

Artificial Intelligence · Computer Science 2024-10-01 Zhiqi Ge , Hongzhe Huang , Mingze Zhou , Juncheng Li , Guoming Wang , Siliang Tang , Yueting Zhuang

Neural networks have become a popular tool in predictive modelling, more commonly associated with machine learning and artificial intelligence than with statistics. Generalised Additive Models (GAMs) are flexible non-linear statistical…

Machine Learning · Statistics 2026-01-06 Jessica Doohan , Lucas Kook , Kevin Burke

GeneralizIT is a Python package designed to streamline the application of Generalizability Theory (G-Theory) in research and practice. G-Theory extends classical test theory by estimating multiple sources of error variance, providing a more…

Applications · Statistics 2024-12-10 Tyler J. Smith , Theresa Kline , Adrienne Kline

The mplot package provides an easy to use implementation of model stability and variable inclusion plots (M\"uller and Welsh 2010; Murray, Heritier, and M\"uller 2013) as well as the adaptive fence (Jiang, Rao, Gu, and Nguyen 2008; Jiang,…

Methodology · Statistics 2018-03-05 Garth Tarr , Samuel Müller , Alan Welsh

The validity of estimation and smoothing parameter selection for the wide class of generalized additive models for location, scale and shape (GAMLSS) relies on the correct specification of a likelihood function. Deviations from such…

Methodology · Statistics 2019-11-14 William H. Aeberhard , Eva Cantoni , Giampiero Marra , Rosalba Radice

The theory of spin models intersects with condensed matter physics, complex systems, graph theory, combinatorial optimization, computational complexity and neural networks. Many ensuing applications rely on the fact that complicated spin…

Mathematical Physics · Physics 2024-08-02 Tobias Reinhart , Benjamin Engel , Gemma De les Coves

libEnsemble is a Python-based toolkit for running dynamic ensembles, developed as part of the DOE Exascale Computing Project. The toolkit utilizes a unique generator--simulator--allocator paradigm, where generators produce input for…

Distributed, Parallel, and Cluster Computing · Computer Science 2025-05-06 Stephen Hudson , Jeffrey Larson , John-Luke Navarro , Stefan M. Wild

Gait recognition, as a reliable biometric technology, has seen rapid development in recent years while it faces significant challenges caused by diverse clothing styles in the real world. This paper introduces BarbieGait, a synthetic gait…

Computer Vision and Pattern Recognition · Computer Science 2026-04-15 Qingyuan Cai , Saihui Hou , Xuecai Hu , Yongzhen Huang

Standard Bayesian inference can build models that combine information from various sources, but this inference may not be reliable if components of a model are misspecified. Cut inference, as a particular type of modularized Bayesian…

Methodology · Statistics 2026-03-18 Yang Liu , Robert J. B. Goudie