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Background: Identifying all possible mapping locations of next-generation sequencing (NGS) reads is highly essential in several applications such as prediction of genomic variants or protein binding motifs located in repeat regions, isoform…

Genomics · Quantitative Biology 2020-03-25 Ngoc Hieu Tran , Xin Chen

Although the sparse multinomial logistic regression (SMLR) has provided a useful tool for sparse classification, it suffers from inefficacy in dealing with high dimensional features and manually set initial regressor values. This has…

Computer Vision and Pattern Recognition · Computer Science 2017-12-05 Faxian Cao , Zhijing Yang , Jinchang Ren , Wing-Kuen Ling

Debugging functional Verilog bugs consumes a significant portion of front-end design time. While Large Language Models (LLMs) have demonstrated great potential in mitigating this effort, existing LLM-based automated debugging methods…

Software Engineering · Computer Science 2025-08-25 Bingkun Yao , Ning Wang , Xiangfeng Liu , Yuxin Du , Yuchen Hu , Hong Gao , Zhe Jiang , Nan Guan

Analyzing time-series cross-sectional (also known as longitudinal or panel) data is an important process across a number of fields, including the social sciences, economics, finance, and medicine. PanelMatch is an R package that implements…

Methodology · Statistics 2025-08-19 Adam Rauh , In Song Kim , Kosuke Imai

Random forests are among the most famous algorithms for solving classification problems, in particular for large-scale data sets. Considering a set of labeled points and several decision trees, the method takes the majority vote to classify…

Optimization and Control · Mathematics 2025-01-24 Jan Pablo Burgard , Maria Eduarda Pinheiro , Martin Schmidt

Accurately and globally mapping human infrastructure is an important and challenging task with applications in routing, regulation compliance monitoring, and natural disaster response management etc.. In this paper we present progress in…

Computer Vision and Pattern Recognition · Computer Science 2020-05-21 Rui Zhang , Conrad Albrecht , Wei Zhang , Xiaodong Cui , Ulrich Finkler , David Kung , Siyuan Lu

Supervised learning techniques are at the center of many tasks in remote sensing. Unfortunately, these methods, especially recent deep learning methods, often require large amounts of labeled data for training. Even though satellites…

Machine Learning · Computer Science 2021-08-03 Pablo Gómez , Gabriele Meoni

Factorial designs are often used in various industrial and sociological experiments to identify significant factors and factor combinations that may affect the process response. In the statistics literature, several studies have…

Methodology · Statistics 2020-12-16 Pratishtha Batra , Neil A. Spencer , Pritam Ranjan

High performance computing (HPC) software ecosystems are inherently heterogeneous, comprising scientific applications that depend on hundreds of external packages, each with distinct build systems, options, and dependency constraints. Tools…

Software Engineering · Computer Science 2025-11-11 Caetano Melone , Daniel Nichols , Konstantinos Parasyris , Todd Gamblin , Harshitha Menon

This paper introduces RankMap, a platform-aware end-to-end framework for efficient execution of a broad class of iterative learning algorithms for massive and dense datasets. Our framework exploits data structure to factorize it into an…

Distributed, Parallel, and Cluster Computing · Computer Science 2016-10-28 Azalia Mirhoseini , Eva L. Dyer , Ebrahim. M. Songhori , Richard G. Baraniuk , Farinaz Koushanfar

Creating data reports is a labor-intensive task involving iterative data exploration, insight extraction, and narrative construction. A key challenge lies in composing the analysis logic-from defining objectives and transforming data to…

Human-Computer Interaction · Computer Science 2025-10-01 Yuan Tian , Chuhan Zhang , Xiaotong Wang , Sitong Pan , Weiwei Cui , Haidong Zhang , Dazhen Deng , Yingcai Wu

Ensemble clustering is a fundamental problem in the machine learning field, combining multiple base clusterings into a better clustering result. However, most of the existing methods are unsuitable for large-scale ensemble clustering tasks…

Machine Learning · Computer Science 2024-10-15 Hongmin Li , Xiucai Ye , Akira Imakura , Tetsuya Sakurai

Label ranking is a prediction task which deals with learning a mapping between an instance and a ranking (i.e., order) of labels from a finite set, representing their relevance to the instance. Boosting is a well-known and reliable ensemble…

Machine Learning · Computer Science 2020-09-24 Lihi Dery , Erez Shmueli

Map construction methods automatically produce and/or update road network datasets using vehicle tracking data. Enabled by the ubiquitous generation of georeferenced tracking data, there has been a recent surge in map construction…

Computational Geometry · Computer Science 2014-11-19 Mahmuda Ahmed , Sophia Karagiorgou , Dieter Pfoser , Carola Wenk

Technology mapping involves mapping logical circuits to a library of cells. Traditionally, the full technology library is used, leading to a large search space and potential overhead. Motivated by randomly sampled technology mapping case…

Hardware Architecture · Computer Science 2024-07-26 Mingju Liu , Daniel Robinson , Yingjie Li , Cunxi Yu

In consensus clustering, a clustering algorithm is used in combination with a subsampling procedure to detect stable clusters. Previous studies on both simulated and real data suggest that consensus clustering outperforms native algorithms.…

We propose the Selective Densification method for fast motion planning through configuration space. We create a sequence of roadmaps by iteratively adding configurations. We organize these roadmaps into layers and add edges between…

Robotics · Computer Science 2020-02-13 Brad Saund , Dmitry Berenson

In this work, we focus on the efficiency and scalability of pairwise constraint-based active clustering, crucial for processing large-scale data in applications such as data mining, knowledge annotation, and AI model pre-training. Our goals…

Machine Learning · Computer Science 2025-09-11 Wen-Bo Xie , Xun Fu , Bin Chen , Yan-Li Lee , Tao Deng , Tian Zou , Xin Wang , Zhen Liu , Jaideep Srivastavad

Gaussian process (GP) models are commonly used statistical metamodels for emulating expensive computer simulators. Fitting a GP model can be numerically unstable if any pair of design points in the input space are close together. Ranjan,…

Computation · Statistics 2015-11-20 Blake MacDonald , Pritam Ranjan , Hugh Chipman

Current semantic segmentation models only exploit first-order statistics, while rarely exploring high-order statistics. However, common first-order statistics are insufficient to support a solid unanimous representation. In this paper, we…

Computer Vision and Pattern Recognition · Computer Science 2020-02-19 Yu Zhang , Xin Sun , Junyu Dong , Changrui Chen , Yue Shen
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