Related papers: Spider Evaluation and Representations of Web Group…
In this study, we present a method of pattern mining based on network theory that enables the identification of protein structures or complexes from synthetic volume densities, without the knowledge of predefined templates or human biases…
Let $\Gamma$ be a rooted tree and let $t$ be a positive integer. We study algebraic invariants and properties of the path ideal generated by monomial corresponding to paths of length $(t-1)$ in $\Gamma$. In particular, we give a recursive…
We propose a new topological invariant of unlabeled trees of N nodes. The invariant is a set of Nx2 matrices of integers, with sum_j k^{d_{i,j}} and v_i as the matrix elements, where d_{i,j} are the elements of the distance matrix and v_i…
The overlap graphs of subtrees in a tree (SOGs) generalise many other graphs classes with set representation characterisations. The complexity of recognising SOGs in open. The complexities of recognising many subclasses of SOGs are known.…
We develop a new method for visualizing and refining the invariances of learned representations. Specifically, we test for a general form of invariance, linearization, in which the action of a transformation is confined to a low-dimensional…
In this paper, we characterize the structure and topological indices of a class of random spider trees (RSTs) such as degree-based Gini index, degree-based Hoover index, generalized Zagreb index and other indices associated with these. We…
In this work we will study the universal labeling algebra A(Gamma), a related algebra B(Gamma), and their behavior as invariants of layered graphs. We will introduce the notion of an upper vertex-like basis, which allows us to recover…
A $k$-ranking of a graph $G$ is a labeling of its vertices from $\{1,\ldots,k\}$ such that any nontrivial path whose endpoints have the same label contains a larger label. The least $k$ for which $G$ has a $k$-ranking is the ranking number…
We introduce bijections between families of rooted maps with unfixed genus and families of so-called blossoming trees endowed with an arbitrary forward matching of their leaves. We first focus on Eulerian maps with controlled vertex…
A vertex cover of a graph $G = (V, E)$ is a set $X \subseteq V$ such that each edge of $G$ is incident to at least one vertex of $X$. A dominating set $D \subseteq V$ is a total dominating set of $G$ if the subgraph induced by $D$ has no…
Sandpile groups are a subtle graph isomorphism invariant, in the form of a finite abelian group, whose cardinality is the number of spanning trees in the graph. We study their group structure for graphs obtained by attaching a cone vertex…
Data quality is crucial for the successful training, generalization and performance of machine learning models. We propose to measure the quality of a subset concerning the dataset it represents, using topological data analysis techniques.…
We study the dimer model for a planar bipartite graph N embedded in a disk, with boundary vertices on the boundary of the disk. Counting dimer configurations with specified boundary conditions gives a point in the totally nonnegative…
With a view towards providing tools for analyzing and understanding digitized images, various notions from algebraic topology have been introduced into the setting of digital topology. In the ordinary topological setting, invariants such as…
This paper deals with computing topological invariants such as connected components, boundary surface genus, and homology groups. For each input data set, we have designed or implemented algorithms to calculate connected components,…
Given the toric (or toral) arrangement defined by a root system $\Phi$, we describe the poset of its layers (connected components of intersections) and we count its elements. Indeed we show how to reduce to zero-dimensional layers, and in…
We describe a canonical spanning tree of the ridge graph of a subword complex on a finite Coxeter group. It is based on properties of greedy facets in subword complexes, defined and studied in this paper. Searching this tree yields an…
We extend the notion of algebraic stack to an arbitrary subcanonical site C. If the topology on C is local on the target and satisfies descent for morphisms, we show that algebraic stacks are precisely those which are weakly equivalent to…
TopoDetect is a Python package that allows the user to investigate if important topological features, such as the Degree of the nodes, their Triangle Count, or their Local Clustering Score, are preserved in the embeddings of graph…
We present a complete description of a class of linearizable planar geodesic webs which contain a parallelizable 3-subweb.