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In Magnetic Resonance Imaging (MRI) data samples are collected in the spatial frequency domain (k-space), typically by time-consuming line-by-line scanning on a Cartesian grid. Scans can be accelerated by simultaneous acquisition of data…

Medical Physics · Physics 2015-03-24 Vivek Athalye , Michael Lustig , Martin Uecker

Simultaneous Localization and Mapping (SLAM) algorithms perform visual-inertial estimation via filtering or batch optimization methods. Empirical evidence suggests that filtering algorithms are computationally faster, while optimization…

Systems and Control · Electrical Eng. & Systems 2022-08-05 Amay Saxena , Chih-Yuan Chiu , Joseph Menke , Ritika Shrivastava , Shankar Sastry

Two problems often plague medical imaging analysis: 1) Non-availability of large quantities of labeled training data, and 2) Dealing with imbalanced data, i.e., abundant data are available for frequent classes, whereas data are highly…

Computer Vision and Pattern Recognition · Computer Science 2026-04-03 Yash Kumar Sharma , Charan Ramtej Kodi , Vineet Padmanabhan

Purpose: The Unadjusted Langevin Algorithm (ULA) in combination with diffusion models can generate high quality MRI reconstructions with uncertainty estimation from highly undersampled k-space data. However, sampling methods such as…

Medical Physics · Physics 2026-05-26 Moritz Blumenthal , Tina Holliber , Jonathan I. Tamir , Martin Uecker

To develop and evaluate a new deep learning MR denoising method that leverages quantitative noise distribution information from the reconstruction process to improve denoising performance and generalization. This retrospective study trained…

One-shot medical image segmentation (MIS) is crucial for medical analysis due to the burden of medical experts on manual annotation. The recent emergence of the segment anything model (SAM) has demonstrated remarkable adaptation in MIS but…

Image and Video Processing · Electrical Eng. & Systems 2025-04-30 Jia Wang , Yunan Mei , Jiarui Liu , Xin Fan

Purpose: To develop an accelerated, robust, and accurate diffusion MRI acquisition and reconstruction technique for submillimeter whole human brain in-vivo scan on a clinical scanner. Methods: We extend the ultra-high resolution diffusion…

Image and Video Processing · Electrical Eng. & Systems 2020-03-06 Gabriel Ramos-Llordén , Lipeng Ning , Congyu Liao , Rinat Mukhometzianov , Oleg Michailovich , Kawin Setsompop , Yogesh Rathi

Automatic magnetic resonance (MR) image processing pipelines are widely used to study people with multiple sclerosis (PwMS), encompassing tasks such as lesion segmentation and brain parcellation. However, the presence of lesion often…

Image and Video Processing · Electrical Eng. & Systems 2024-10-08 Jinwei Zhang , Lianrui Zuo , Yihao Liu , Samuel Remedios , Bennett A. Landman , Jerry L. Prince , Aaron Carass

Purpose To alleviate the spatial encoding limitations of single-shot EPI by developing multi-shot segmented EPI for ultra-high-resolution fMRI with reduced ghosting artifacts from subject motion and respiration. Methods Segmented EPI can…

The variability introduced by differences in MRI scanner models, acquisition protocols, and imaging sites hinders consistent analysis and generalizability across multicenter studies. We present a novel image-based harmonization framework…

Computer Vision and Pattern Recognition · Computer Science 2025-10-28 Luca Caldera , Lara Cavinato , Francesca Ieva

Fast spin-echo (FSE) pulse sequences for Magnetic Resonance Imaging (MRI) offer important imaging contrast in clinically feasible scan times. T2-shuffling is widely used to resolve temporal signal dynamics in FSE acquisitions by exploiting…

Image and Video Processing · Electrical Eng. & Systems 2023-03-07 Molin Zhang , Junshen Xu , Yamin Arefeen , Elfar Adalsteinsson

$\textbf{Purpose:}$ To develop and evaluate an operator learning framework for nonlinear inversion (NLI) of brain magnetic resonance elastography (MRE) data, which enables real-time inversion of elastograms with comparable spatial accuracy…

Image and Video Processing · Electrical Eng. & Systems 2025-10-07 Juampablo E. Heras Rivera , Caitlin M. Neher , Mehmet Kurt

Functional MRI (fMRI) is an important tool for non-invasive studies of brain function. Over the past decade, multi-echo fMRI methods that sample multiple echo times has become popular with potential to improve quantification. While these…

Image and Video Processing · Electrical Eng. & Systems 2023-12-12 Hongyi Gu , Chi Zhang , Zidan Yu , Christoph Rettenmeier , V. Andrew Stenger , Mehmet Akçakaya

Photonic integrated circuits are emerging as a promising platform for accelerating matrix multiplications in deep learning, leveraging the inherent parallel nature of light. Although various schemes have been proposed and demonstrated to…

Emerging Technologies · Computer Science 2024-06-04 Rui Tang , Shuhei Ohno , Ken Tanizawa , Kazuhiro Ikeda , Makoto Okano , Kasidit Toprasertpong , Shinichi Takagi , Mitsuru Takenaka

Current state-of-the-art reconstruction for quantitative tissue maps from fast, compressive, Magnetic Resonance Fingerprinting (MRF), use supervised deep learning, with the drawback of requiring high-fidelity ground truth tissue map…

Image and Video Processing · Electrical Eng. & Systems 2022-11-24 Ketan Fatania , Kwai Y. Chau , Carolin M. Pirkl , Marion I. Menzel , Peter Hall , Mohammad Golbabaee

Purpose: This study aims to propose a model-based reconstruction algorithm for simultaneous multi-slab diffusion MRI acquired with blipped-CAIPI gradients (blipped-SMSlab), which can also incorporate distortion correction. Methods: We…

Medical Physics · Physics 2023-04-03 Jieying Zhang , Simin Liu , Erpeng Dai , Xin Shao , Ziyu Li , Karla L. Miller , Wenchuan Wu , Hua Guo

Compressed Sensing (CS) significantly speeds up Magnetic Resonance Image (MRI) processing and achieves accurate MRI reconstruction from under-sampled k-space data. According to the current research, there are still several problems with…

Image and Video Processing · Electrical Eng. & Systems 2023-10-24 Junpeng Tan , Chunmei Qing , Xiangmin Xu

Image reconstruction in Magnetic Resonance Imaging (MRI) is fundamentally a linear inverse problem, such that the image can be recovered via explicit pseudoinversion of the encoding matrix by solving $\textbf{data} = \textbf{Encode} \times…

A method is proposed for assessing the temporal resolution of Structured Illumination Microscopy (SIM), by tracking the amplitude of different spatial frequency components over time, and comparing them to a temporally-oscillating…

Optics · Physics 2020-08-05 Abderrahim Boualam , Christopher J Rowlands

Magnetic Resonance Imaging (MRI) typically recruits multiple sequences (defined here as "modalities"). As each modality is designed to offer different anatomical and functional clinical information, there are evident disparities in the…

Image and Video Processing · Electrical Eng. & Systems 2022-03-09 Chengjia Wang , Guang Yang , Giorgos Papanastasiou