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Geometry and topology are the main factors that determine the functional properties of proteins. In this work, we show how to use the Gauss linking integral (GLN) in the form of a matrix diagram - for a pair of a loop and a tail - to study…

Biomolecules · Quantitative Biology 2020-05-12 Wanda Niemyska , Kenneth C. Millett , Joanna I. Sulkowska

Many classical constructions, such as Plotkin's and Turyn's, were generalized by matrix product (MP) codes. Quasi-twisted (QT) codes, on the other hand, form an algebraically rich structure class that contains many codes with best-known…

Information Theory · Computer Science 2023-09-26 Ramy Taki Eldin

Cutting off the tail of the Woods-Saxon and generalized Woods-Saxon potentials changes the distribution of the poles of the $S$-matrix considerably. Here we modify the tail of the cut-off Woods-Saxon (CWS) and cut-off generalized…

Nuclear Theory · Physics 2017-11-15 A. Baran , T. Vertse

Let $A$ be a ring with identity, $\sigma$ a ring endomorphism of $A$ that maps the identity to itself, $\delta$ a $\sigma$-derivation of $A$, and consider the skew-polynomial ring $A[X;\sigma,\delta]$. When $A$ is a finite field, a Galois…

Rings and Algebras · Mathematics 2021-05-27 Mhammed Boulagouaz , Abdulaziz Deajim

In classic trellis-coded modulation (TCM) signal constellations of twice the cardinality are applied when compared to an uncoded transmission enabling transmission of one bit of redundancy per PAM-symbol, i.e., rates of $\frac{K}{K+1}$ when…

Information Theory · Computer Science 2013-01-18 Fabian Schuh , Andreas Schenk , Johannes B. Huber

We characterize the generator matrix in standard form of generalized Gabidulin codes. The parametrization we get for the non-systematic part of this matrix coincides with the $q$-analogue of generalized Cauchy matrices, leading to the…

Information Theory · Computer Science 2020-01-29 Alessandro Neri

In this paper, we study some repeated-root two-dimensional cyclic and constacyclic codes over a finite field $F=\mathbb{F}_q$. We obtain the generator matrices and generator polynomials of these codes and their duals. We also investigate…

Information Theory · Computer Science 2022-05-31 Marziyeh Beygi Khormaei , Ashkan Nikseresht , Shohreh Namazi

Neural decoders were introduced as a generalization of the classic Belief Propagation (BP) decoding algorithms, where the Trellis graph in the BP algorithm is viewed as a neural network, and the weights in the Trellis graph are optimized by…

Information Theory · Computer Science 2021-05-13 Xiangyu Chen , Min Ye

Motivated by a concept studied in [1], we consider a property of matrices over finite fields that generalizes triangular totally nonsingular matrices to block matrices. We show that (1) matrices with this property suffice to construct good…

Information Theory · Computer Science 2020-12-08 Pavel Pudlák

Convolutions of long-tailed and subexponential distributions play a major role in the analysis of many stochastic systems. We study these convolutions, proving some important new results through a simple and coherent approach, and showing…

Probability · Mathematics 2017-11-29 Sergey Foss , Dmitry Korshunov , Stan Zachary

In the classic view introduced by R. A. Fisher, a quantitative trait is encoded by many loci with small, additive effects. Recent advances in QTL mapping have begun to elucidate the genetic architectures underlying vast numbers of…

Populations and Evolution · Quantitative Biology 2013-10-04 Etienne Rajon , Joshua B. Plotkin

In our previous paper math.QA/0412192 the Cayley-Hamilton identity for the GL(m|n) type quantum matrix algebra was obtained. Here we continue investigation of that identity. We derive it in three alternative forms and, most importantly, we…

Quantum Algebra · Mathematics 2007-05-23 Dimitri Gurevich , Pavel Pyatov , Pavel Saponov

Sequencing a DNA strand, as part of the read process in DNA storage, produces multiple noisy copies which can be combined to produce better estimates of the original strand; this is called trace reconstruction. One can reduce the error rate…

Information Theory · Computer Science 2024-08-22 Sundara Rajan Srinivasavaradhan , Sivakanth Gopi , Henry D. Pfister , Sergey Yekhanin

Spectral-type subspace clustering algorithms have shown excellent performance in many subspace clustering applications. The existing spectral-type subspace clustering algorithms either focus on designing constraints for the reconstruction…

Machine Learning · Computer Science 2023-05-08 Lai Wei , Zhengwei Chen , Jun Yin , Changming Zhu , Rigui Zhou , Jin Liu

We study the ring of characteristic classes with values in the Chow ring for principal $G$-bundles over schemes. If we consider bundles which are locally trivial in the Zariski topology, then we show, for $G$ reductive, that this ring is…

alg-geom · Mathematics 2008-02-03 D. Edidin , W. Graham

The evolution of genetic systems has been analyzed through the use of modifier gene models, in which a neutral gene is posited to control the transmission of other genes under selection. Analysis of modifier gene models has found the…

Populations and Evolution · Quantitative Biology 2013-02-04 Lee Altenberg

Can the cross product be generalized? Why are the trace and determinant so important in matrix theory? What do all the coefficients of the characteristic polynomial represent? This paper describes a technique for `doodling' equations from…

History and Overview · Mathematics 2007-12-14 Elisha Peterson

The Golden space-time trellis coded modulation (GST-TCM) scheme was proposed in \cite{Hong06} for a high rate $2\times 2$ multiple-input multiple-output (MIMO) system over slow fading channels. In this letter, we present the performance…

Information Theory · Computer Science 2007-11-09 Emanuele Viterbo , Yi Hong

We propose a multivariate generative model to capture the complex dependence structure often encountered in business and financial data. Our model features heterogeneous and asymmetric tail dependence between all pairs of individual…

Machine Learning · Computer Science 2025-12-10 Xiangqian Sun , Xing Yan , Qi Wu

Background/ Objectives: Resolving the origin of the genetic code is fundamental to understanding how life began its journey out of the chemical world. Since its deciphering some 60 years ago, there is still no general theory of the…

Populations and Evolution · Quantitative Biology 2026-04-14 Jacques H. Daniel