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Phylogenetic trees and networks are leaf-labelled graphs that are used to describe evolutionary histories of species. The Tree Containment problem asks whether a given phylogenetic tree is embedded in a given phylogenetic network. Given a…

Populations and Evolution · Quantitative Biology 2010-06-17 Leo van Iersel , Charles Semple , Mike Steel

We reformulate the problem of modularity maximization over the set of partitions of a network as a conic optimization problem over the completely positive cone, converting it from a combinatorial optimization problem to a convex continuous…

Data Analysis, Statistics and Probability · Physics 2008-12-18 Roland Hildebrand

The problem of time-series clustering is considered in the case where each data-point is a sample generated by a piecewise stationary ergodic process. Stationary processes are perhaps the most general class of processes considered in…

Machine Learning · Statistics 2019-06-27 Azadeh Khaleghi , Daniil Ryabko

The class of quasi-chain graphs is an extension of the well-studied class of chain graphs. This latter class enjoys many nice and important properties, such as bounded clique-width, implicit representation, well-quasi-ordering by induced…

Combinatorics · Mathematics 2021-04-12 Bogdan Alecu , Aistis Atminas , Vadim Lozin , Dmitriy Malyshev

Non-deterministic constraint logic (NCL) is a simple model of computation based on orientations of a constraint graph with edge weights and vertex demands. NCL captures \PSPACE\xspace and has been a useful tool for proving algorithmic…

Data Structures and Algorithms · Computer Science 2020-11-23 Tatsuhiko Hatanaka , Felix Hommelsheim , Takehiro Ito , Yusuke Kobayashi , Moritz Mühlenthaler , Akira Suzuki

We study a planted clique model introduced by Feige where a complete graph of size $c\cdot n$ is planted uniformly at random in an arbitrary $n$-vertex graph. We give a simple deterministic algorithm that, in almost linear time, recovers a…

Computational Complexity · Computer Science 2025-05-13 Francesco Agrimonti , Marco Bressan , Tommaso d'Orsi

The complexity of problems involving global constraints is usually much more difficult to understand than the complexity of problems only involving local constraints. A natural form of global constraints are connectivity constraints. We…

Data Structures and Algorithms · Computer Science 2023-02-08 Falko Hegerfeld , Stefan Kratsch

The question of what can be computed, and how efficiently, are at the core of computer science. Not surprisingly, in distributed systems and networking research, an equally fundamental question is what can be computed in a…

Distributed, Parallel, and Cluster Computing · Computer Science 2016-04-01 Fabian Kuhn , Thomas Moscibroda , Roger Wattenhofer

We use ideas from distributed computing to study dynamic environments in which computational nodes, or decision makers, follow adaptive heuristics (Hart 2005), i.e., simple and unsophisticated rules of behavior, e.g., repeatedly "best…

Distributed, Parallel, and Cluster Computing · Computer Science 2010-10-13 Aaron D. Jaggard , Michael Schapira , Rebecca N. Wright

We systematically study the computational complexity of a broad class of computational problems in phylogenetic reconstruction. The class contains for example the rooted triple consistency problem, forbidden subtree problems, the quartet…

Computational Complexity · Computer Science 2017-08-15 Manuel Bodirsky , Peter Jonsson , Trung Van Pham

Parameterized complexity theory offers a framework for a refined analysis of hard algorithmic problems. Instead of expressing the running time of an algorithm as a function of the input size only, running times are expressed with respect to…

Distributed, Parallel, and Cluster Computing · Computer Science 2021-02-18 Sebastian Siebertz , Alexandre Vigny

We study the complexity of the Distributed Constraint Satisfaction Problem (DCSP) on a synchronous, anonymous network from a theoretical standpoint. In this setting, variables and constraints are controlled by agents which communicate with…

Data Structures and Algorithms · Computer Science 2021-01-25 Silvia Butti , Victor Dalmau

This paper studies the computational difficulty of clustering problems that are defined directly on a continuous probability density. Rather than working with finite samples, we assume the density is given as a polynomial and ask whether it…

Computational Complexity · Computer Science 2026-05-01 Angshul Majumdar

A number of recent papers -- e.g. Brandt et al. (STOC 2016), Chang et al. (FOCS 2016), Ghaffari & Su (SODA 2017), Brandt et al. (PODC 2017), and Chang & Pettie (FOCS 2017) -- have advanced our understanding of one of the most fundamental…

Distributed, Parallel, and Cluster Computing · Computer Science 2018-04-06 Alkida Balliu , Juho Hirvonen , Janne H. Korhonen , Tuomo Lempiäinen , Dennis Olivetti , Jukka Suomela

In this work, we use algebraic methods for studying distance computation and subgraph detection tasks in the congested clique model. Specifically, we adapt parallel matrix multiplication implementations to the congested clique, obtaining an…

Distributed, Parallel, and Cluster Computing · Computer Science 2019-12-24 Keren Censor-Hillel , Petteri Kaski , Janne H. Korhonen , Christoph Lenzen , Ami Paz , Jukka Suomela

We design fast deterministic algorithms for distance computation in the congested clique model. Our key contributions include: -- A $(2+\epsilon)$-approximation for all-pairs shortest paths in $O(\log^2{n} / \epsilon)$ rounds on unweighted…

Distributed, Parallel, and Cluster Computing · Computer Science 2019-11-01 Keren Censor-Hillel , Michal Dory , Janne H. Korhonen , Dean Leitersdorf

Clustering is a well-known unsupervised machine learning approach capable of automatically grouping discrete sets of instances with similar characteristics. Constrained clustering is a semi-supervised extension to this process that can be…

Machine Learning · Computer Science 2023-03-02 Germán González-Almagro , Daniel Peralta , Eli De Poorter , José-Ramón Cano , Salvador García

The quantum statistics mechanism is very powerful for investigating the equilibrium states and the phase transitions in complex spin disorder systems. The spin disorder systems act as an interdisciplinary platform for solving the optimum…

General Physics · Physics 2025-06-17 Zhidong Zhang

Convolutional Neural Networks (CNNs) have recently emerged as the dominant model in computer vision. If provided with enough training data, they predict almost any visual quantity. In a discrete setting, such as classification, CNNs are not…

Computer Vision and Pattern Recognition · Computer Science 2015-11-25 Deepak Pathak , Philipp Krähenbühl , Stella X. Yu , Trevor Darrell

The Cluster Deletion problem takes a graph $G$ as input and asks for a minimum size set of edges $X$ such that $G-X$ is the disjoint union of complete graphs. An equivalent formulation is the Clique Partition problem, which asks to find a…

Data Structures and Algorithms · Computer Science 2025-09-26 Nicola Galesi , Tony Huynh , Fariba Ranjbar
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