Related papers: Binary de Bruijn Sequences via Zech's Logarithms
We introduce Grinch, a new algorithm for large-scale, non-greedy hierarchical clustering with general linkage functions that compute arbitrary similarity between two point sets. The key components of Grinch are its rotate and graft…
The use of complex networks as a modern approach to understanding the world and its dynamics is well-established in literature. The adjacency matrix, which provides a one-to-one representation of a complex network, can also yield several…
Tree trace reconstruction aims to learn the binary node labels of a tree, given independent samples of the tree passed through an appropriately defined deletion channel. In recent work, Davies, R\'acz, and Rashtchian used combinatorial…
Counting the number of small patterns is a central task in network analysis. While this problem is well studied for graphs, many real-world datasets are naturally modeled as hypergraphs, motivating the need for efficient hypergraph motif…
Addition chains are a classical construction for fast exponentiation and related computation problems. In this paper, we study a chain for a fixed integer $n$ by decomposing each generator into a \emph{determiner} and a \emph{regulator}…
We provide a fast distributed algorithm for detecting $h$-cycles in the \textsf{Congested Clique} model, whose running time decreases as the number of $h$-cycles in the graph increases. In undirected graphs, constant-round algorithms are…
Alignment-based sequence similarity searches, while accurate for some type of sequences, can produce incorrect results when used on more divergent but functionally related sequences that have undergone the sequence rearrangements observed…
Conventional unsupervised hashing methods usually take advantage of similarity graphs, which are either pre-computed in the high-dimensional space or obtained from random anchor points. On the one hand, existing methods uncouple the…
Binary function similarity detection plays an important role in a wide range of security applications. Existing works usually assume that the query function and target function share equal semantics and compare their full semantics to…
The Neighbor-Joining algorithm is a popular distance-based phylogenetic method that computes a tree metric from a dissimilarity map arising from biological data. Realizing dissimilarity maps as points in Euclidean space, the algorithm…
In this work, we develop applications of the complementary log-log (cloglog) link to problems in Bayesian nonparametrics. Although less commonly used than the probit or logit links, we find that the cloglog link is computationally and…
Representing a proof tree by a combinator term that reduces to the tree lets subtle forms of duplication within the tree materialize as duplicated subterms of the combinator term. In a DAG representation of the combinator term these…
Consider a large database of $n$ data items that need to be stored using $m$ servers. We study how to encode information so that a large number $k$ of read requests can be performed in parallel while the rate remains constant (and ideally…
Clustering is the propensity of nodes that share a common neighbour to be connected. It is ubiquitous in many networks but poses many modelling challenges. Clustering typically manifests itself by a higher than expected frequency of…
A universal cycle for a set S of combinatorial objects is a cyclic sequence of length |S|that contains a representation of each element in S exactly once as a substring. If S is the set of k-subsets of [n] = {1, 2, . . . , n}, it is…
We study the problem of conjunctive query evaluation relative to a class of queries; this problem is formulated here as the relational homomorphism problem relative to a class of structures A, wherein each instance must be a pair of…
We analyze the signum-generation method for creating random dichotomic sequences with prescribed correlation properties. The method is based on a binary mapping of the convolution of continuous random numbers with some function originated…
This paper describes a method for the recovering of software architectures from a set of similar (but unrelated) software products in binary form. One intention is to drive refactoring into software product lines and combine architecture…
Let $\widetilde{\alpha}$ be a length-$L$ cyclic sequence of characters from a size-$K$ alphabet $\mathcal{A}$ such that the number of occurrences of any length-$m$ string on $\mathcal{A}$ as a substring of $\widetilde{\alpha}$ is $\lfloor L…
We present an exact algorithm for computing all common subgraphs with the maximum number of vertices across multiple graphs. Our approach is further extended to handle the connected Maximum Common Subgraph (MCS), identifying the largest…