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Collectively coordinated cell migration plays a role in tissue embryogenesis, cancer, homeostasis and healing. To study these processes, different cell-based modelling approaches have been developed, ranging from lattice-based cellular…

Soft Condensed Matter · Physics 2023-05-19 Carine P. Beatrici , Cassio A. Kirch , Silke Henkes , François Graner , Leonardo G. Brunnet

Comprehensive understanding of particle motion in microfluidic devices is essential to unlock novel technologies for shape-based separation and sorting of microparticles like microplastics, cells and crystal polymorphs. Such particles…

This paper deals with systems of spherical particles immersed in a viscous fluid. Two aspects are studied, namely the controllability of such systems, with particular attention to the case of one active particle and either one or two…

Analysis of PDEs · Mathematics 2024-10-23 Marta Zoppello , Henry Shum , Marco Morandotti

We consider the rich variety of collective motion patterns emerging when aligning active particles move in the presence of randomly distributed obstacles - representing quenched noise in two dimensions. In order to get insight into the…

Soft Condensed Matter · Physics 2023-02-21 Danial Vahabli , Tamas Vicsek

We study a synthetic system of motile Escherichia coli bacteria encapsulated inside giant lipid vesicles. Forces exerted by the bacteria on the inner side of the membrane are sufficient to extrude membrane tubes filled with one or several…

Bacterial colonies are a well-known example of living active matter, exhibiting collective behaviors such as nematic alignment and collective motion that play an important role in the spread of microbial infections. While the underlying…

We studied the swimming of \textit{Escherichia coli} bacteria in the vicinity of the critical point in a solution of the non-ionic surfactant \chem{C_{12}E_{5}} in buffer solution. In phase contrast microscopy, each swimming cell produces a…

Soft Condensed Matter · Physics 2018-08-07 Nick Koumakis , Clémence Devailly , Wilson C. K. Poon

We investigate the collective behavior of sterically interacting self-propelled particles confined in a harmonic potential. Our theoretical and numerical study unveils the emergence of distinctive collective polar organizations, revealing…

Soft Condensed Matter · Physics 2024-05-29 Daniel Canavello , Rubens H. Damascena , Leonardo R. E. Cabral , Clécio C. de Souza Silva

Vortex phenomena are ubiquitous in nature, from vortices of quantum particles and living cells [1-7], to whirlpools, tornados, and spiral galaxies. Yet, effective control of vortex transport from one place to another at any scale has thus…

Inspired by the Turing mechanism for pattern formation, we propose a simple self-propelled particle model with short-ranged alignment and anti-alignment at larger distances. It is able to produce orientationally ordered states, periodic…

Soft Condensed Matter · Physics 2016-05-02 Robert Grossmann , Pawel Romanczuk , Markus Bär , Lutz Schimansky-Geier

Escherichia coli has long been used as a model organism due to the extensive experimental characterization of its pathways and molecular components. Take chemotaxis as an example, which allows bacteria to sense and swim in response to…

Cell Behavior · Quantitative Biology 2015-12-09 Gabriele Micali , Robert G. Endres

Rod-shaped bacteria, such as Escherichia coli, commonly live forming mounded colonies. They initially grow two-dimensionally on a surface and finally achieve three-dimensional growth. While it was recently reported that three-dimensional…

Soft Condensed Matter · Physics 2022-12-23 Takuro Shimaya , Kazumasa A. Takeuchi

Cell walls define a cell shape in bacteria. They are rigid to resist large internal pressures, but remarkably plastic to adapt to a wide range of external forces and geometric constraints. Currently, it is unknown how bacteria maintain…

Soft Condensed Matter · Physics 2014-05-01 Ariel Amir , Farinaz Babaeipour , Dustin B. McIntosh , David R. Nelson , Suckjoon Jun

In recent years the functionality of synthetic active microparticles has edged even closer to that of their biological counterparts. However, we still lack the understanding needed to recreate at the microscale key features of autonomous…

Soft Condensed Matter · Physics 2024-10-28 Philipp W. A. Schönhöfer , Sharon C. Glotzer

Diverse processes--e.g. bioremediation, biofertilization, and microbial drug delivery--rely on bacterial migration in disordered, three-dimensional (3D) porous media. However, how pore-scale confinement alters bacterial motility is unknown…

Soft Condensed Matter · Physics 2019-05-09 Tapomoy Bhattacharjee , Sujit S. Datta

The Keller-Segel system has been widely proposed as a model for bacterial waves driven by chemotactic processes. Current experiments on {\em E. coli} have shown precise structure of traveling pulses. We present here an alternative…

We propose a scheme for generating two-dimensional turbulence in harmonically trapped atomic condensates with the novelty of controlling the polarization (net rotation) of the turbulence. Our scheme is based on an initial giant…

Quantum Gases · Physics 2016-04-06 A. Cidrim , F. E. A. dos Santos , L. Galantucci , V. S. Bagnato , C. F. Barenghi

We demonstrate the control of vortical motion of neutral classical particles in driven superlattices. Our superlattice consists of a superposition of individual lattices whose potential depths are modulated periodically in time but with…

Chaotic Dynamics · Physics 2020-09-30 Aritra K. Mukhopadhyay , Peter Schmelcher

Active matter systems characterized by the interplay of chirality and self-alignment offer a rich landscape for the emergence of non-equilibrium collective behaviors and the development of autonomous materials. We present a versatile…

Soft Condensed Matter · Physics 2026-04-20 Timo Wagner , Michael Himpel , Thomas Ihle , Horst-Holger Boltz

Many structural properties of conventional passive materials are known to arise from the symmetries of their microscopic constituents. By contrast, it is largely unclear how the interplay between cell shape and self-propulsion controls the…

Soft Condensed Matter · Physics 2014-01-29 H. H. Wensink , V. Kantsler , R. E. Goldstein , J. Dunkel
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