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Solving inverse problems and achieving statistical rigour in landscape evolution models requires running many model realizations. Parallel computation is necessary to achieve this in a reasonable time. However, no previous algorithm is…

Computational Engineering, Finance, and Science · Computer Science 2019-01-23 Richard Barnes

Dynamic programming is a powerful technique that is, unfortunately, often inherently sequential. That is, there exists no unified method to parallelize algorithms that use dynamic programming. In this paper, we attempt to address this issue…

Data Structures and Algorithms · Computer Science 2018-09-18 MohammadHossein Bateni , Soheil Behnezhad , Mahsa Derakhshan , MohammadTaghi Hajiaghayi , Vahab Mirrokni

The paper describes an improved parallel MPI-based implementation of VBARMS, a variable block variant of the pARMS preconditioner proposed by Li,~Saad and Sosonkina [NLAA, 2003] for solving general nonsymmetric linear systems. The parallel…

Numerical Analysis · Mathematics 2015-08-11 Bruno Carpentieri , Jia Liao , Masha Sosonkina , Aldo Bonfiglioli

Group invariants are used in high energy physics to define quantum field theory interactions. In this paper, we are presenting the parallel algebraic computation of special invariants called symplectic and even focusing on one particular…

Distributed, Parallel, and Cluster Computing · Computer Science 2020-03-03 Joseph Ben Geloun , Camille Coti , Allen D. Malony

Data structures for efficient sampling from a set of weighted items are an important building block of many applications. However, few parallel solutions are known. We close many of these gaps both for shared-memory and distributed-memory…

Data Structures and Algorithms · Computer Science 2021-07-20 Lorenz Hübschle-Schneider , Peter Sanders

Furthering our understanding of many of today's interesting problems in plasma physics---including plasma based acceleration and magnetic reconnection with pair production due to quantum electrodynamic effects---requires large-scale kinetic…

Computational Physics · Physics 2020-10-28 Kyle G. Miller , Roman P. Lee , Adam Tableman , Anton Helm , Ricardo A. Fonseca , Viktor K. Decyk , Warren B. Mori

We consider a parallel computational model that consists of $P$ processors, each with a fast local ephemeral memory of limited size, and sharing a large persistent memory. The model allows for each processor to fault with bounded…

Distributed, Parallel, and Cluster Computing · Computer Science 2018-06-15 Guy E. Blelloch , Phillip B. Gibbons , Yan Gu , Charles McGuffey , Julian Shun

Optimal multiple sequence alignment by dynamic programming, like many highly dimensional scientific computing problems, has failed to benefit from the improvements in computing performance brought about by multi-processor systems, due to…

Distributed, Parallel, and Cluster Computing · Computer Science 2023-11-30 Manal Helal , Hossam El-Gindy , Lenore Mullin , Bruno Gaeta

We discuss the advantages of parallelization by multithreading on graphics processing units (GPUs) for parallel tempering Monte Carlo computer simulations of an exemplified bead-spring model for homopolymers. Since the sampling of a large…

Computational Physics · Physics 2015-05-28 Jonathan Groß , Wolfhard Janke , Michael Bachmann

The accelerating technological landscape and drive towards net-zero emission made the power system grow in scale and complexity. Serial computational approaches for grid planning and operation struggle to execute necessary calculations…

Systems and Control · Electrical Eng. & Systems 2022-07-07 Ahmed Al-Shafei , Hamidreza Zareipour , Yankai Cao

This paper proposes a general formulation for temporal parallelisation of dynamic programming for optimal control problems. We derive the elements and associative operators to be able to use parallel scans to solve these problems with…

Optimization and Control · Mathematics 2022-01-25 Simo Särkkä , Ángel F. García-Fernández

We fix the supports A=(A_1,...,A_k) of a list of tropical polynomials and define the tropical resultant TR(A) to be the set of choices of coefficients such that the tropical polynomials have a common solution. We prove that TR(A) is the…

Algebraic Geometry · Mathematics 2016-08-12 Anders Jensen , Josephine Yu

Basing on a modification of the "Dichotomy Algorithm" (Terekhov, 2010), we propose a parallel procedure for solving tridiagonal systems of equations with Toeplitz matrices. Taking the structure of the Toeplitz matrices, we may substantially…

Numerical Analysis · Mathematics 2015-12-15 Andrew V. Terekhov

We describe a parallel solver for the discretized weakly singular space-time boundary integral equation of the spatially two-dimensional heat equation. The global space-time nature of the system matrices leads to improved parallel…

Numerical Analysis · Mathematics 2021-02-23 Stefan Dohr , Michal Merta , Günther Of , Olaf Steinbach , Jan Zapletal

We consider a project that consists of a set of activities performed in parallel under constraints on their start and finish times, including start-finish precedence relationships, release start times, release end times, and deadlines. The…

Optimization and Control · Mathematics 2020-07-10 Nikolai Krivulin

Regular expression matching is essential for many applications, such as finding patterns in text, exploring substrings in large DNA sequences, or lexical analysis. However, sequential regular expression matching may be time-prohibitive for…

Formal Languages and Automata Theory · Computer Science 2015-06-30 Suejb Memeti , Sabri Pllana

This paper presents the design, implementation, and evaluation of the PyTorch distributed data parallel module. PyTorch is a widely-adopted scientific computing package used in deep learning research and applications. Recent advances in…

Distributed, Parallel, and Cluster Computing · Computer Science 2020-06-30 Shen Li , Yanli Zhao , Rohan Varma , Omkar Salpekar , Pieter Noordhuis , Teng Li , Adam Paszke , Jeff Smith , Brian Vaughan , Pritam Damania , Soumith Chintala

As the need for computational power and efficiency rises, parallel systems become increasingly popular among various scientific fields. While multiple core-based architectures have been the center of attention for many years, the rapid…

Distributed, Parallel, and Cluster Computing · Computer Science 2019-06-11 E. I. Ioannidis , N. Cheimarios , A. N. Spyropoulos , A. G. Boudouvis

In this paper, a parallel overlapping domain decomposition preconditioner is proposed to solve the linear system of equations arising from the extended finite element discretization of elastic crack problems. The algorithm partitions the…

Computational Engineering, Finance, and Science · Computer Science 2021-12-07 Tian Wei , Huang Jingjing , Chen Rongliang , Jiang Yi

We provide a mathematically proven parallelization scheme for particle methods on distributed-memory computer systems. Particle methods are a versatile and widely used class of algorithms for computer simulations and numerical predictions…

Distributed, Parallel, and Cluster Computing · Computer Science 2024-01-05 Johannes Pahlke , Ivo F. Sbalzarini