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This talk will review a little over a decade's research on applying certain stochastic models to biological sequence analysis. The models themselves have a longer history, going back over 30 years, although many novel variants have arisen…

Probability · Mathematics 2007-05-23 T. P. Speed

Community detection for large networks poses challenges due to the high computational cost as well as heterogeneous community structures. In this paper, we consider widely existing real-world networks with ``grouped communities'' (or ``the…

Computation · Statistics 2024-11-04 Sheng Zhang , Rui Song , Wenbin Lu , Ji Zhu

A stochastic model for a chemical reaction network is embedded in a one-parameter family of models with species numbers and rate constants scaled by powers of the parameter. A systematic approach is developed for determining appropriate…

Probability · Mathematics 2010-11-09 Hye-Won Kang , Thomas G. Kurtz

Detecting the time evolution of the community structure of networks is crucial to identify major changes in the internal organization of many complex systems, which may undergo important endogenous or exogenous events. This analysis can be…

Physics and Society · Physics 2015-07-21 Clara Granell , Richard K. Darst , Alex Arenas , Santo Fortunato , Sergio Gómez

Spatio-Temporal (ST) data science, which includes sensing, managing, and mining large-scale data across space and time, is fundamental to understanding complex systems in domains such as urban computing, climate science, and intelligent…

Databases · Computer Science 2025-03-19 Yuxuan Liang , Haomin Wen , Yutong Xia , Ming Jin , Bin Yang , Flora Salim , Qingsong Wen , Shirui Pan , Gao Cong

Scientific document embeddings contain a variety of rich features which can be harnessed for downstream tasks such as recommendation, ranking, and clustering. We explore which tangible insights can be drawn from scientific document…

Digital Libraries · Computer Science 2025-06-11 Brian D. Zimmerman , Joshua Folkins , Olga Vechtomova

The stochastic block model (SBM) is a generalization of the Erd\H{o}s--R\'enyi model of random graphs that describes the interaction of a finite number of distinct communities. In sparse Erd\H{o}s--R\'enyi graphs, it is known that a…

Data Structures and Algorithms · Computer Science 2024-03-05 Anna Brandenberger , Byron Chin , Nathan S. Sheffield , Divya Shyamal

The citation impact of Environment and Planning B can be visualized using its citation relations with journals in its environment as the links of a network. The size of the nodes is varied in correspondence to the relative citation impact…

Digital Libraries · Computer Science 2009-11-17 Loet Leydesdorff

Clustering of publication networks is an efficient way to obtain classifications of large collections of research publications. Such classifications can be used to, e.g., detect research topics, normalize citation relations, or explore the…

Digital Libraries · Computer Science 2024-03-15 Peter Sjögårde , Per Ahlgren

The unsupervised learning of community structure, in particular the partitioning vertices into clusters or communities, is a canonical and well-studied problem in exploratory graph analysis. However, like most graph analyses the…

Machine Learning · Computer Science 2020-07-27 Benjamin W. Priest , Alec Dunton , Geoffrey Sanders

A growing number of systems are represented as networks whose architecture conveys significant information and determines many of their properties. Examples of network architecture include modular, bipartite, and core-periphery structures.…

General Finance · Quantitative Finance 2016-06-29 Paolo Barucca , Fabrizio Lillo

This paper contributes to a development of randomized methods for neural networks. The proposed learner model is generated incrementally by stochastic configuration (SC) algorithms, termed as Stochastic Configuration Networks (SCNs). In…

Neural and Evolutionary Computing · Computer Science 2018-02-14 Dianhui Wang , Ming Li

Computational methods for discovering patterns of local correlations in sequences are important in computational biology. Here we show how to determine the optimal partitioning of aligned sequences into non-overlapping segments such that…

Computational Engineering, Finance, and Science · Computer Science 2012-06-26 Joseph Bockhorst , Nebojsa Jojic

The stochastic block model (SBM) is a widely used framework for community detection in networks, where the network structure is typically represented by an adjacency matrix. However, conventional SBMs are not directly applicable to an…

Machine Learning · Statistics 2023-10-18 Jie Jian , Mu Zhu , Peijun Sang

We consider the problem of community detection or clustering in the labeled Stochastic Block Model (LSBM) with a finite number $K$ of clusters of sizes linearly growing with the global population of items $n$. Every pair of items is labeled…

Probability · Mathematics 2016-05-24 Se-Young Yun , Alexandre Proutiere

Community detection is the task of clustering objects based on their pairwise relationships. Most of the model-based community detection methods, such as the stochastic block model and its variants, are designed for networks with binary…

Machine Learning · Statistics 2024-12-06 Xiang Li , Yunpeng Zhao , Qing Pan , Ning Hao

In the present paper we study a sparse stochastic network enabled with a block structure. The popular Stochastic Block Model (SBM) and the Degree Corrected Block Model (DCBM) address sparsity by placing an upper bound on the maximum…

Machine Learning · Statistics 2021-10-08 Majid Noroozi , Marianna Pensky , Ramchandra Rimal

Sequential sentence classification (SSC) in scientific publications is crucial for supporting downstream tasks such as fine-grained information retrieval and extractive summarization. However, current SSC methods are constrained by model…

Computation and Language · Computer Science 2024-12-02 Mengfei Lan , Lecheng Zheng , Shufan Ming , Halil Kilicoglu

Graphs are naturally used to describe the structures of various real-world systems in biology, society, computer science etc., where subgraphs or motifs as basic blocks play an important role in function expression and information…

Social and Information Networks · Computer Science 2021-02-11 Jinhuan Wang , Pengtao Chen , Bin Ma , Jiajun Zhou , Zhongyuan Ruan , Guanrong Chen , Qi Xuan

We propose a new dynamic stochastic blockmodel that focuses on the analysis of interaction lengths in networks. The model does not rely on a discretization of the time dimension and may be used to analyze networks that evolve continuously…

Methodology · Statistics 2019-01-29 Riccardo Rastelli , Michael Fop