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Locomotion in Stokes flow is an intensively-studied problem because it describes important biological phenomena such as the motility of many species' sperm, bacteria, algae and protozoa. Numerical computations can be challenging,…

Fluid Dynamics · Physics 2018-05-15 Meurig T. Gallagher , David J. Smith

The method of regularized stokeslets is a powerful numerical method to solve the Stokes flow equations for problems in biological fluid mechanics. A recent variation of this method incorporates a nearest-neighbor discretization to improve…

Fluid Dynamics · Physics 2018-06-06 Meurig T. Gallagher , Debajyoti Choudhuri , David J. Smith

The method of regularised stokeslets is widely used in microscale biological fluid dynamics due to its ease of implementation, natural treatment of complex moving geometries, and removal of singular functions to integrate. The standard…

Numerical Analysis · Mathematics 2021-03-10 Meurig Gallagher , David Smith

A stable numerical solution of the steady Stokes problem requires compatibility between the choice of velocity and pressure approximation that has traditionally proven problematic for meshless methods. In this work, we present a…

Numerical Analysis · Mathematics 2016-11-15 Nathaniel Trask , Martin Maxey , Xiaozhe Hu

The presence of a nearby boundary is likely to be important in the life cycle and evolution of motile flagellate bacteria. This has led many authors to employ numerical simulations to model near-surface bacterial motion and compute…

Biological Physics · Physics 2021-09-21 Orrin Shindell , Hoa Nguyen , Nicholas Coltharp , Frank Healy , Bruce Rodenborn

Many problems in fluid dynamics are effectively modeled as Stokes flows - slow, viscous flows where the Reynolds number is small. Boundary integral equations are often used to solve these problems, where the fundamental solutions for the…

Numerical Analysis · Mathematics 2022-12-21 J. Thomas Beale , Christina Jones , Jillian Reale , Svetlana Tlupova

In this paper we apply the recently developed mimetic discretization method to the mixed formulation of the Stokes problem in terms of vorticity, velocity and pressure. The mimetic discretization presented in this paper and in [50] is a…

Numerical Analysis · Mathematics 2015-06-03 Jasper Kreeft , Marc Gerritsma

We present an exponentially convergent semi-implicit meshless algorithm for the solution of Navier-Stokes equations in complex domains. The algorithm discretizes partial derivatives at scattered points using radial basis functions as…

Numerical Analysis · Mathematics 2021-06-15 Shantanu Shahane , Surya Pratap Vanka

In this paper, we construct a simple and robust two-point finite volume discretization applicable to isotropic linearized elasticity, valid in also in the incompressible Stokes' limit. The discretization is based only on co-located,…

Numerical Analysis · Mathematics 2025-01-22 Jan Martin Nordbotten , Eirik Keilegavlen

The general system of images for regularized Stokeslets (GSIRS) developed by Cortez and Varela (2015) is used extensively to model Stokes flow phenomena such as microorganisms swimming near a boundary. Our collaborative team uses…

The Immersed Boundary method has evolved into one of the most useful computational methods in studying fluid structure interaction. On the other hand, the Immersed Boundary method is also known to suffer from a severe timestep stability…

Computational Engineering, Finance, and Science · Computer Science 2009-11-13 Thomas Y. Hou , Zuoqiang Shi

There are many application papers that solve elliptic boundary value problems by meshless methods, and they use various forms of generalized stiffness matrices that approximate derivatives of functions from values at scattered nodes…

Numerical Analysis · Mathematics 2016-12-23 Robert Schaback

The tractions that cells exert on a gel substrate from the observed displacements is an increasingly attractive and valuable information in biomedical experiments. The computation of these tractions requires in general the solution of an…

Computational Physics · Physics 2016-08-30 Jose J Munoz

The isogeometric approximation of the Stokes problem in a trimmed domain is studied. This setting is characterized by an underlying mesh unfitted with the boundary of the physical domain making the imposition of the essential boundary…

Numerical Analysis · Mathematics 2022-02-02 Riccardo Puppi

The method of regularized Stokeslets, based on the divergence-free exact solution to the equations of highly viscous flow due to a spatially-smoothed concentrated force, is widely employed in biological fluid mechanics. Many problems of…

Fluid Dynamics · Physics 2019-06-12 James Tyrrell , David J Smith , Rosemary J Dyson

In this paper, we address a way to reduce the total computational cost of meshless approximation by reducing the required stencil size through spatially varying computational node regularity. Rather than covering the entire domain with…

Numerical Analysis · Mathematics 2025-02-19 Miha Rot , Mitja Jančič , Gregor Kosec

The immersed boundary method is a numerical and mathematical formulation for solving fluid-structure interaction problems. It relies on solving fluid equations on an Eulerian fluid grid and interpolating the resulting velocity back onto…

Numerical Analysis · Mathematics 2020-03-19 Ondrej Maxian , Charles S. Peskin

An extension of the Method of Regularized Stokeslets (MRS) in three dimensions is developed for triangulated surfaces with a piecewise linear force distribution. The method extends the regularized Stokeslet segment methodology used for…

Numerical Analysis · Mathematics 2024-11-05 Dana Ferranti , Ricardo Cortez

Boundary integral numerical methods are among the most accurate methods for interfacial Stokes flow, and are widely applied. They have the advantage that only the boundary of the domain must be discretized, which reduces the number of…

Numerical Analysis · Mathematics 2021-05-18 David M. Ambrose , Michael Siegel , Keyang Zhang

Slender-body approximations have been successfully used to explain many phenomena in low-Reynolds number fluid mechanics. These approximations typically use a line of singularity solutions to represent the flow. These singularities can be…

Fluid Dynamics · Physics 2021-09-17 Boan Zhao , Lyndon Koens
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