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This article is a survey on the topic of polynomial amoebas. We review results of papers written on the topic with an emphasis on its computational aspects. Polynomial amoebas have numerous applications in various domains of mathematics and…
The paper presents a novel software framework for Association Rule Mining named uARMSolver. The framework is written fully in C++ and runs on all platforms. It allows users to preprocess their data in a transaction database, to make…
The MFEM (Modular Finite Element Methods) library is a high-performance C++ library for finite element discretizations. MFEM supports numerous types of finite element methods and is the discretization engine powering many computational…
This work continues the development of an intensional approach to computability initiated in previous work, in which programs and computations, rather than functions, constitute the primary objects of study. In this setting, models of…
Data Access will be the next generation data abstraction layer for EPICS. Its implementation in C++ brought up a number of issues that are related to object oriented technology's impact on CPU and memory usage. What is gained by the new…
Particle-In-Cell codes are widely used for plasma physics simulations. It is often the case that particles within a computational cell need to be split to improve the statistics or, in the case of non-uniform meshes, to avoid the…
Probabilistic Programming Languages (PPLs) are a powerful tool in machine learning, allowing highly expressive generative models to be expressed succinctly. They couple complex inference algorithms, implemented by the language, with an…
Diffeomorphic matching (only one of several names for this technique) is a technique for non-rigid registration of curves and surfaces in which the curve or surface is embedded in the flow of a time-series of vector fields. One seeks the…
This paper introduces a novel surrogate modeling framework for aerodynamic applications based on Neural Fields. The proposed approach, MARIO (Modulated Aerodynamic Resolution Invariant Operator), addresses non parametric geometric…
This work evaluates the potential of large language models (LLMs) to power digital assistants capable of complex action execution. These assistants rely on pre-trained programming knowledge to execute multi-step goals by composing objects…
We introduce CBXPy and ConsensusBasedX.jl, Python and Julia implementations of consensus-based interacting particle systems (CBX), which generalise consensus-based optimization methods (CBO) for global, derivative-free optimisation. The…
Presolving has become an essential component of modern MIP solvers both in terms of computational performance and numerical robustness. In this paper, we present PaPILO, a new C++ header-only library that provides a large set of presolving…
We have developed a fully parallel C++/MPI based simulation code for variable-density particle-laden turbulent flows. The fluid is represented through a uniform Eulerian staggered grid, while particles are modeled using a Lagrangian…
We introduce OCULAR, an innovative hardware and software solution for three-dimensional dynamic image analysis of fine particles. Current state-of-the art instruments for dynamic image analysis are largely limited to two-dimensional…
The Active Brownian Particle (ABP) model exemplifies a wide class of active matter particles. In this work, we demonstrate how this model can be cast into a field theory in both two and three dimensions. Our aim is manifold: we wish both to…
We present the open source distributed software package Poisson-Boltzmann Analytical Method (PB-AM), a fully analytical solution to the linearized Poisson Boltzmann equation, for molecules represented as non-overlapping spherical cavities.…
The present work extends the direct-forcing immersed boundary method introduced by Garc\'ia-Villalba et al. (2023), broadening its application from spherical to arbitrarily-shaped particles, while maintaining its capacity to address both…
In the field of computational fluid dynamics, direct numerical simulations generate highly detailed data for the analysis of turbulent flows by resolving all relevant physical scales. Yet their large size, complexity, and heterogeneity make…
Categories of partitions are combinatorial structures arising from the representation theory of certain compact quantum groups and are linked to classical diagram algebras such as the Temperley-Lieb algebra. In this paper, we present…
Nonlinear cellular automata are extensively used in simulations, image processing, cryptography, and so on. The determination of their fundamental properties, injectivity and surjectivity, related to information loss during the evolution,…