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This article is a survey on the topic of polynomial amoebas. We review results of papers written on the topic with an emphasis on its computational aspects. Polynomial amoebas have numerous applications in various domains of mathematics and…

Complex Variables · Mathematics 2023-05-02 Vitaly A. Krasikov

The paper presents a novel software framework for Association Rule Mining named uARMSolver. The framework is written fully in C++ and runs on all platforms. It allows users to preprocess their data in a transaction database, to make…

Databases · Computer Science 2020-10-22 Iztok Fister , Iztok Fister

The MFEM (Modular Finite Element Methods) library is a high-performance C++ library for finite element discretizations. MFEM supports numerous types of finite element methods and is the discretization engine powering many computational…

This work continues the development of an intensional approach to computability initiated in previous work, in which programs and computations, rather than functions, constitute the primary objects of study. In this setting, models of…

Logic in Computer Science · Computer Science 2026-05-19 Thomas Seiller

Data Access will be the next generation data abstraction layer for EPICS. Its implementation in C++ brought up a number of issues that are related to object oriented technology's impact on CPU and memory usage. What is gained by the new…

Software Engineering · Computer Science 2007-05-23 R. Lange , J. Hill

Particle-In-Cell codes are widely used for plasma physics simulations. It is often the case that particles within a computational cell need to be split to improve the statistics or, in the case of non-uniform meshes, to avoid the…

Computational Physics · Physics 2021-04-22 Roch Smets , Nicolas Aunais , ANdrea Ciardi , Matthieu Drouin , Martin Campos-Pino , Philip Deegan

Probabilistic Programming Languages (PPLs) are a powerful tool in machine learning, allowing highly expressive generative models to be expressed succinctly. They couple complex inference algorithms, implemented by the language, with an…

Programming Languages · Computer Science 2020-10-19 Alexander Collins , Vinod Grover

Diffeomorphic matching (only one of several names for this technique) is a technique for non-rigid registration of curves and surfaces in which the curve or surface is embedded in the flow of a time-series of vector fields. One seeks the…

Numerical Analysis · Mathematics 2009-11-13 C. J. Cotter

This paper introduces a novel surrogate modeling framework for aerodynamic applications based on Neural Fields. The proposed approach, MARIO (Modulated Aerodynamic Resolution Invariant Operator), addresses non parametric geometric…

This work evaluates the potential of large language models (LLMs) to power digital assistants capable of complex action execution. These assistants rely on pre-trained programming knowledge to execute multi-step goals by composing objects…

We introduce CBXPy and ConsensusBasedX.jl, Python and Julia implementations of consensus-based interacting particle systems (CBX), which generalise consensus-based optimization methods (CBO) for global, derivative-free optimisation. The…

Optimization and Control · Mathematics 2024-12-04 Rafael Bailo , Alethea Barbaro , Susana N. Gomes , Konstantin Riedl , Tim Roith , Claudia Totzeck , Urbain Vaes

Presolving has become an essential component of modern MIP solvers both in terms of computational performance and numerical robustness. In this paper, we present PaPILO, a new C++ header-only library that provides a large set of presolving…

Optimization and Control · Mathematics 2024-03-21 Ambros Gleixner , Leona Gottwald , Alexander Hoen

We have developed a fully parallel C++/MPI based simulation code for variable-density particle-laden turbulent flows. The fluid is represented through a uniform Eulerian staggered grid, while particles are modeled using a Lagrangian…

Computational Physics · Physics 2016-01-22 Hadi Pouransari , Milad Mortazavi , Ali Mani

We introduce OCULAR, an innovative hardware and software solution for three-dimensional dynamic image analysis of fine particles. Current state-of-the art instruments for dynamic image analysis are largely limited to two-dimensional…

Computer Vision and Pattern Recognition · Computer Science 2024-12-10 Sadegh Nadimi , Vasileios Angelidakis , Sadaf Maramizonouz , Chao Zhang

The Active Brownian Particle (ABP) model exemplifies a wide class of active matter particles. In this work, we demonstrate how this model can be cast into a field theory in both two and three dimensions. Our aim is manifold: we wish both to…

Soft Condensed Matter · Physics 2022-12-26 Ziluo Zhang , Lili Fehértói-Nagy , Maria Polackova , Gunnar Pruessner

We present the open source distributed software package Poisson-Boltzmann Analytical Method (PB-AM), a fully analytical solution to the linearized Poisson Boltzmann equation, for molecules represented as non-overlapping spherical cavities.…

Biomolecules · Quantitative Biology 2016-09-27 Lisa E. Feldberg , David H. Brookes , Eng-Hui Yap , Elizabeth Jurrus , Nathan Baker , Teresa Head-Gordon

The present work extends the direct-forcing immersed boundary method introduced by Garc\'ia-Villalba et al. (2023), broadening its application from spherical to arbitrarily-shaped particles, while maintaining its capacity to address both…

In the field of computational fluid dynamics, direct numerical simulations generate highly detailed data for the analysis of turbulent flows by resolving all relevant physical scales. Yet their large size, complexity, and heterogeneity make…

Fluid Dynamics · Physics 2026-03-26 Lorenzo Piu , Heinz Pitsch , Alessandro Parente

Categories of partitions are combinatorial structures arising from the representation theory of certain compact quantum groups and are linked to classical diagram algebras such as the Temperley-Lieb algebra. In this paper, we present…

Data Structures and Algorithms · Computer Science 2025-02-11 Nicolas Faroß , Sebastian Volz

Nonlinear cellular automata are extensively used in simulations, image processing, cryptography, and so on. The determination of their fundamental properties, injectivity and surjectivity, related to information loss during the evolution,…

Data Structures and Algorithms · Computer Science 2024-07-29 Chen Wang , Junchi Ma , Defu Lin , Weilin Chen , Chao Wang