Related papers: Arabidopsis roots segmentation based on morphologi…
We present an approach to leaf level segmentation of images of Arabidopsis thaliana plants based upon detected edges. We introduce a novel approach to edge classification, which forms an important part of a method to both count the leaves…
Post-genomic research deals with challenging problems in screening genomes of organisms for particular functions or potential for being the targets of genetic engineering for desirable biological features. 'Phenotyping' of wild type and…
One of the challenging problems in biology is to classify plants based on their reaction on genetic mutation. Arabidopsis Thaliana is a plant that is so interesting, because its genetic structure has some similarities with that of human…
Automated segmentation of individual leaves of a plant in an image is a prerequisite to measure more complex phenotypic traits in high-throughput phenotyping. Applying state-of-the-art machine learning approaches to tackle leaf instance…
Arabidopsis is a widely used model plant to gain basic knowledge on plant physiology and development. Live imaging is an important technique to visualize and quantify elemental processes in plant development. To uncover novel theories…
To understand dynamic developmental processes, living tissues must be imaged frequently and for extended periods of time. Root development is extensively studied at cellular resolution to understand basic mechanisms underlying pattern…
The segmentation of plant roots from soil and other growing media in X-ray computed tomography images is needed to effectively study the root system architecture without excavation. However, segmentation is a challenging problem in this…
Arabidopsis thaliana is an important model organism for understanding the genetics and molecular biology of plants. Its highly selfing nature, together with other important features, such as small size, short generation time, small genome…
An efficient advanced numerical model for mapping the distribution of the buried tree roots is presented. It not only simplify the complicate root branches to an easy manipulated model, but also grasp the main structure of tree roots…
One of the key characteristics of multicellular organisms is the ability to establish and maintain shapes, or morphologies, under a variety of physical and chemical perturbations. A quantitative description of the underlying morphological…
Automated segmentation approaches are crucial to quantitatively analyze large-scale 3D microscopy images. Particularly in deep tissue regions, automatic methods still fail to provide error-free segmentations. To improve the segmentation…
This study introduces a novel method for quantifying challenging carotenoids in leaf tissues, which typically produce less stable signals than fruits, grains, and roots, by applying Linear Discriminant Analysis (LDA) modeling to interpret…
This work applies an encoder-decoder-based machine learning network to detect and track the motion and growth of the flowering stem apex of Arabidopsis Thaliana. Based on the CenterTrack, a machine learning back-end network, we trained a…
Fruit tree image segmentation is an essential problem in automating a variety of agricultural tasks such as phenotyping, harvesting, spraying, and pruning. Many research papers have proposed a diverse spectrum of solutions suitable to…
Plant roots typically exhibit a highly complex and dense architecture, incorporating numerous slender lateral roots and branches, which significantly hinders the precise capture and modeling of the entire root system. Additionally, roots…
The output of image the segmentation process is usually not very clear due to low quality features of Satellite images. The purpose of this study is to find a suitable Conditional Random Field (CRF) to achieve better clarity in a segmented…
In recent years, there has been an increasing interest in image-based plant phenotyping, applying state-of-the-art machine learning approaches to tackle challenging problems, such as leaf segmentation (a multi-instance problem) and…
Foundation segmentation models achieve reasonable leaf instance extraction from top-view crop images without training (i.e., zero-shot). However, segmenting entire plant individuals with each consisting of multiple overlapping leaves…
Plant developmental plasticity, particularly in root system architecture, is fundamental to understanding adaptability and agricultural sustainability. ChronoRoot 2.0 builds upon established low-cost hardware while significantly enhancing…
The root is an important organ of a plant since it is responsible for water and nutrient uptake. Analyzing and modelling variabilities in the geometry and topology of roots can help in assessing the plant's health, understanding its growth…