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Certain classes of problems, including perceptual data understanding, robotics, discovery, and learning, can be represented as incremental, dynamically constructed belief networks. These automatically constructed networks can be dynamically…
In real applications, generally small data sets can be obtained. At present, most of the practical applications of machine learning use classic models based on big data to solve the problem of small data sets. However, the deep neural…
Non-linear models recently receive a lot of attention as people are starting to discover the power of statistical and embedding features. However, tree-based models are seldom studied in the context of structured learning despite their…
The entities in directed networks arising from real-world interactions are often naturally organized under some hierarchical structure. Given a directed, weighted, graph with edges and node labels, we introduce ranking problem where the…
Tensors are a natural way to express correlations among many physical variables, but storing tensors in a computer naively requires memory which scales exponentially in the rank of the tensor. This is not optimal, as the required memory is…
In this paper, we consider the knot matching problem arising in computational forestry. The knot matching problem is an important problem that needs to be solved to advance the state of the art in automatic strength prediction of lumber. We…
Augmenting an existing sequential data structure with extra information to support greater functionality is a widely used technique. For example, search trees are augmented to build sequential data structures like order-statistic trees,…
Phylogenetic networks generalise phylogenetic trees and allow for the accurate representation of the evolutionary history of a set of present-day species whose past includes reticulate events such as hybridisation and lateral gene transfer.…
We investigate tree-automatic well-founded trees. Using Delhomme's decomposition technique for tree-automatic structures, we show that the (ordinal) rank of a tree-automatic well-founded tree is strictly below omega^omega. Moreover, we make…
Suppose N is a phylogenetic network indicating a complicated relationship among individuals and taxa. Often of interest is a much simpler network, for example, a species tree T, that summarizes the most fundamental relationships. The…
We consider the following generalization of binary search in sorted arrays to tree domains. In each step of the search, an algorithm is querying a vertex $q$, and as a reply, it receives an answer, which either states that $q$ is the…
Merge trees are fundamental structures in topological data analysis. Interleaving distance is a widely accepted metric for comparing merge trees, with applications in visualization and scientific computing. While a greedy algorithm exists…
We consider the design of adaptive data structures for searching elements of a tree-structured space. We use a natural generalization of the rotation-based online binary search tree model in which the underlying search space is the set of…
Edit distances between merge trees of scalar fields have many applications in scientific visualization, such as ensemble analysis, feature tracking or symmetry detection. In this paper, we propose branch mappings, a novel approach to the…
Tree-structured neural networks have proven to be effective in learning semantic representations by exploiting syntactic information. In spite of their success, most existing models suffer from the underfitting problem: they recursively use…
Identifying the rank of species in a social or ecological network is a difficult task, since the rank of each species is invariably determined by complex interactions stipulated with other species. Simply put, the rank of a species is a…
Predictions using a combination of decision trees are known to be effective in machine learning. Typical ideas for constructing a combination of decision trees for prediction are bagging and boosting. Bagging independently constructs…
Bayesian networks are popular probabilistic models that capture the conditional dependencies among a set of variables. Inference in Bayesian networks is a fundamental task for answering probabilistic queries over a subset of variables in…
Construction of phylogenetic trees and networks for extant species from their characters represents one of the key problems in phylogenomics. While solution to this problem is not always uniquely defined and there exist multiple methods for…
Weight-balanced trees are a popular form of self-balancing binary search trees. Their popularity is due to desirable guarantees, for example regarding the required work to balance annotated trees. While usual weight-balanced trees perform…