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The likelihood-free sequential Approximate Bayesian Computation (ABC) algorithms, are increasingly popular inference tools for complex biological models. Such algorithms proceed by constructing a succession of probability distributions over…

Computation · Statistics 2012-10-12 Daniel Silk , Saran Filippi , Michael P. H. Stumpf

Importance sampling (IS) represents a fundamental technique for a large surge of off-policy reinforcement learning approaches. Policy gradient (PG) methods, in particular, significantly benefit from IS, enabling the effective reuse of…

Machine Learning · Computer Science 2024-05-10 Matteo Papini , Giorgio Manganini , Alberto Maria Metelli , Marcello Restelli

Continuous-time birth-death-shift (BDS) processes are frequently used in stochastic modeling, with many applications in ecology and epidemiology. In particular, such processes can model evolutionary dynamics of transposable elements -…

Methodology · Statistics 2014-12-02 Jason Xu , Peter Guttorp , Midori Kato-Maeda , Vladimir N. Minin

We develop an efficient algorithm to implement the recently introduced binary tree state (BTS) ansatz on a classical computer. BTS allows a simple approximation to permanents arising from the computationally intractable antisymmetric…

Chemical Physics · Physics 2024-03-01 Rishab Dutta , Fei Gao , Armin Khamoshi , Thomas M. Henderson , Gustavo E. Scuseria

Binary code analysis has immense importance in the research domain of software security. Today, software is very often compiled for various Instruction Set Architectures (ISAs). As a result, cross-architecture binary code analysis has…

Software Engineering · Computer Science 2024-05-01 Iftakhar Ahmad , Lannan Luo

In this paper, we present a novel stochastic optimization method, which uses the binary search technique with first order gradient based optimization method, called Binary Search Gradient Optimization (BSG) or BiGrad. In this optimization…

Machine Learning · Computer Science 2020-07-28 Vijay Pandey

Respondent-driven sampling (RDS) is an approach to sampling design and analysis which utilizes the networks of social relationships that connect members of the target population, using chain-referral methods to facilitate sampling. RDS…

Methodology · Statistics 2015-08-19 Yakir Berchenko , Jonathan Rosenblatt , Simon D. W. Frost

Embedding image features into a binary Hamming space can improve both the speed and accuracy of large-scale query-by-example image retrieval systems. Supervised hashing aims to map the original features to compact binary codes in a manner…

Machine Learning · Computer Science 2016-11-17 Guosheng Lin , Chunhua Shen , Anton van den Hengel

Lifting is a crucial technique in mixed integer programming (MIP) for generating strong valid inequalities, which serve as cutting planes to improve the branch-and-cut algorithm. We first propose an exact sequential lifting algorithm for…

Optimization and Control · Mathematics 2026-02-27 Xintong Wang , Liang Chen , Yu-Hong Dai

The two-tower architecture has been widely applied for learning item and user representations, which is important for large-scale recommender systems. Many two-tower models are trained using various in-batch negative sampling strategies,…

Information Retrieval · Computer Science 2021-10-29 Jinpeng Wang , Jieming Zhu , Xiuqiang He

Consider the collection of all binary matrices having a specific sequence of row and column sums and consider sampling binary matrices uniformly from this collection. Practical algorithms for exact uniform sampling are not known, but there…

Computation · Statistics 2013-01-28 Matthew T. Harrison

We propose a new framework for efficiently sampling from complex probability distributions using a combination of normalizing flows and elliptical slice sampling (Murray et al., 2010). The central idea is to learn a diffeomorphism, through…

Methodology · Statistics 2023-03-28 Alberto Cabezas , Christopher Nemeth

An efficient computational approach for optimal reconstruction of binary-type images suitable for models in various applications including biomedical imaging is developed and validated. The methodology includes derivative-free optimization…

Optimization and Control · Mathematics 2022-09-27 Paul R. Arbic , Vladislav Bukshtynov

In recent years, there has been an increasing demand on efficient algorithms for large scale change point detection problems. To this end, we propose seeded binary segmentation, an approach relying on a deterministic construction of…

Methodology · Statistics 2023-03-13 Solt Kovács , Housen Li , Peter Bühlmann , Axel Munk

Gaussian boson sampling (GBS), a computational problem conjectured to be hard to simulate on a classical machine, has been at the forefront of recent years' experimental and theoretical efforts to demonstrate quantum advantage. The…

Quantum Physics · Physics 2024-02-05 Gabriele Bressanini , Benoit Seron , Leonardo Novo , Nicolas J. Cerf , M. S. Kim

We propose an efficient novel path sampling-based framework designed to accelerate the investigation of rare events in complex molecular systems. A key innovation is the shift from sampling restricted path ensemble distributions, as in…

Chemical Physics · Physics 2025-03-28 Gianmarco Lazzeri , Peter G. Bolhuis , Roberto Covino

Breadth First Search (BFS) and other graph traversal techniques are widely used for measuring large unknown graphs, such as online social networks. It has been empirically observed that an incomplete BFS is biased toward high degree nodes.…

Discrete Mathematics · Computer Science 2011-02-23 Maciej Kurant , Athina Markopoulou , Patrick Thiran

This paper presents a new approach for batch Bayesian Optimization (BO) called Thompson Sampling-Regret to Sigma Ratio directed sampling (TS-RSR), where we sample a new batch of actions by minimizing a Thompson Sampling approximation of a…

Machine Learning · Computer Science 2025-06-10 Zhaolin Ren , Na Li

Binary hashing is a well-known approach for fast approximate nearest-neighbor search in information retrieval. Much work has focused on affinity-based objective functions involving the hash functions or binary codes. These objective…

Machine Learning · Computer Science 2016-02-05 Miguel Á. Carreira-Perpiñán , Ramin Raziperchikolaei

We develop the first approximate inference algorithm for 1-Best (and M-Best) decoding in bidirectional neural sequence models by extending Beam Search (BS) to reason about both forward and backward time dependencies. Beam Search (BS) is a…

Computer Vision and Pattern Recognition · Computer Science 2017-05-25 Qing Sun , Stefan Lee , Dhruv Batra