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We consider complete graphs with edge weights and/or node weights taking values in some set. In the first part of this paper, we show that a large number of graphs are completely determined, up to isomorphism, by the distribution of their…

Combinatorics · Mathematics 2007-10-11 Mireille Boutin , Gregor Kemper

In this paper we introduce a general framework for the study of limits of relational structures in general and graphs in particular, which is based on a combination of model theory and (functional) analysis. We show how the various…

Combinatorics · Mathematics 2021-04-23 Jaroslav Nesetril , Patrice Ossona De Mendez

An undirected graphical model is a joint probability distribution defined on an undirected graph G*, where the vertices in the graph index a collection of random variables and the edges encode conditional independence relationships among…

Machine Learning · Statistics 2013-12-03 Divyanshu Vats , Robert Nowak

A growing set of on-line applications are generating data that can be viewed as very large collections of small, dense social graphs -- these range from sets of social groups, events, or collaboration projects to the vast collection of…

Social and Information Networks · Computer Science 2013-05-15 Johan Ugander , Lars Backstrom , Jon Kleinberg

Research in transportation frequently involve modelling and predicting attributes of events that occur at regular intervals. The event could be arrival of a bus at a bus stop, the volume of a traffic at a particular point, the demand at a…

Machine Learning · Computer Science 2015-08-14 Narayanan U. Edakunni , Aditi Raghunathan , Abhishek Tripathi , John Handley , Fredric Roulland

We study random graph models for directed acyclic graphs, an important class of networks that includes citation networks, food webs, and feed-forward neural networks among others. We propose two specific models, roughly analogous to the…

Physics and Society · Physics 2009-10-16 Brian Karrer , M. E. J. Newman

For many graph-related problems, it can be essential to have a set of structurally diverse graphs. For instance, such graphs can be used for testing graph algorithms or their neural approximations. However, to the best of our knowledge, the…

Machine Learning · Computer Science 2024-12-13 Fedor Velikonivtsev , Mikhail Mironov , Liudmila Prokhorenkova

A common model for social networks are Geometric Inhomogeneous Random Graphs (GIRGs), in which vertices draw a random position in some latent geometric space, and the probability of two vertices forming an edge depends on their geometric…

Social and Information Networks · Computer Science 2025-06-25 Marc Kaufmann , Johannes Lengler , Ulysse Schaller , Konstantin Sturm

Exponential-family random graph models (ERGMs) provide a principled and flexible way to model and simulate features common in social networks, such as propensities for homophily, mutuality, and friend-of-a-friend triad closure, through…

Methodology · Statistics 2012-08-01 Pavel N. Krivitsky

We investigate the relationship between the structure of a discrete graphical model and the support of the inverse of a generalized covariance matrix. We show that for certain graph structures, the support of the inverse covariance matrix…

Machine Learning · Statistics 2014-01-07 Po-Ling Loh , Martin J. Wainwright

We propose a general modeling and inference framework that composes probabilistic graphical models with deep learning methods and combines their respective strengths. Our model family augments graphical structure in latent variables with…

Machine Learning · Statistics 2017-07-10 Matthew J. Johnson , David Duvenaud , Alexander B. Wiltschko , Sandeep R. Datta , Ryan P. Adams

In this paper we investigate the use of staged tree models for discrete longitudinal data. Staged trees are a type of probabilistic graphical model for finite sample space processes. They are a natural fit for longitudinal data because a…

Methodology · Statistics 2024-01-10 Jack Storror Carter , Manuele Leonelli , Eva Riccomagno , Alessandro Ugolini

Graphical Gaussian models have proven to be useful tools for exploring network structures based on multivariate data. Applications to studies of gene expression have generated substantial interest in these models, and resulting recent…

Machine Learning · Computer Science 2014-08-12 Michael A. Finegold , Mathias Drton

In this paper, we study the graph classification problem from the graph homomorphism perspective. We consider the homomorphisms from $F$ to $G$, where $G$ is a graph of interest (e.g. molecules or social networks) and $F$ belongs to some…

Machine Learning · Computer Science 2020-07-03 Hoang NT , Takanori Maehara

Model-based trees are used to find subgroups in data which differ with respect to model parameters. In some applications it is natural to keep some parameters fixed globally for all observations while asking if and how other parameters vary…

Computation · Statistics 2025-10-07 Heidi Seibold , Torsten Hothorn , Achim Zeileis

A generalization of the random geometric graph (RGG) model is proposed by considering a set of points uniformly and independently distributed on a rectangle of unit area instead of on a unit square [0,1]^2. The topological properties of the…

Physics and Society · Physics 2015-05-20 Ernesto Estrada , Matthew Sheerin

Chain graphs combine directed and undirected graphs and their underlying mathematics combines properties of the two. This paper gives a simplified definition of chain graphs based on a hierarchical combination of Bayesian (directed) and…

Artificial Intelligence · Computer Science 2013-02-21 Wray L. Buntine

We explore the use of graph neural networks (GNNs) to model spatial processes in which there is no a priori graphical structure. Similar to finite element analysis, we assign nodes of a GNN to spatial locations and use a computational…

Machine Learning · Computer Science 2019-11-19 Ferran Alet , Adarsh K. Jeewajee , Maria Bauza , Alberto Rodriguez , Tomas Lozano-Perez , Leslie Pack Kaelbling

The family of visibility algorithms were recently introduced as mappings between time series and graphs. Here we extend this method to characterize spatially extended data structures by mapping scalar fields of arbitrary dimension into…

Data Analysis, Statistics and Probability · Physics 2017-09-13 Lucas Lacasa , Jacopo Iacovacci

Graphical Transformation Models (GTMs) are introduced as a novel approach to effectively model multivariate data with intricate marginals and complex dependency structures semiparametrically, while maintaining interpretability through the…

Methodology · Statistics 2025-08-28 Matthias Herp , Johannes Brachem , Michael Altenbuchinger , Thomas Kneib