English
Related papers

Related papers: Predicting reaction coordinates in energy landscap…

200 papers

We introduce a functional framework which is specially suited to formulate several classes of anisotropic evolution equations of tempered diffusion type. Under an amenable set of hypothesis involving a very natural potential function, these…

Analysis of PDEs · Mathematics 2020-06-16 Juan Calvo , Antonio Marigonda , Giandomenico Orlandi

Reaction diffusion equations have been used to model a wide range of biological phenomenon related to population spread and proliferation from ecology to cancer. It is commonly assumed that individuals in a population have homogeneous…

Dynamical Systems · Mathematics 2023-04-14 Kyle Nguyen , Erica M. Rutter , Kevin Flores

The reaction-coordinate mapping is a useful technique to study complex quantum dissipative dynamics into structured environments. In essence, it aims to mimic the original problem by means of an 'augmented system', which includes a suitably…

Quantum Physics · Physics 2019-09-11 Luis A. Correa , Buqing Xu , Benjamin Morris , Gerardo Adesso

Space and time scales are not independent in diffusion. In fact, numerical simulations show that different patterns are obtained when space and time steps ($\Delta x$ and $\Delta t$) are varied independently. On the other hand, anisotropy…

patt-sol · Physics 2015-06-26 Rui Dilao , Joaquim Sainhas

We propose a new model to describe diffusion processes within active deformable media. Our general theoretical framework is based on physical and mathematical considerations, and it suggests to use diffusion tensors directly coupled to…

Tissues and Organs · Quantitative Biology 2021-03-03 Christian Cherubini , Simonetta Filippi , Alessio Gizzi , Ricardo Ruiz-Baier

We theoretically analyze diffusion trajectories of an anisotropic object moving on a two dimensional space in the absence of an external field. In determining diffusion parameters associated with the shape anisotropy, we devise a measure…

Statistical Mechanics · Physics 2015-08-31 Sunghan Roh , Juyeon Yi , Yong Woon Kim

Enhanced diffusion, which describes the accelerated spread of passive scalars due to the interaction between advection and molecular diffusion, has been extensively studied in simplified geometries, such as uniform shear and radial flows.…

Analysis of PDEs · Mathematics 2024-11-04 Rômulo Damasclin Chaves dos Santos , Jorge Henrique de Oliveira Sales

We consider a reaction-diffusion equation on a network subjected to dynamic boundary conditions, with time delayed behaviour, also allowing for multiplicative Gaussian noise perturbations. Exploiting semigroup theory, we rewrite the…

Probability · Mathematics 2017-02-17 Francesco Cordoni , Luca Di Persio

The dynamic of real-world optimization problems raises new challenges to the traditional particle swarm optimization (PSO). Responding to these challenges, the dynamic optimization has received considerable attention over the past decade.…

Neural and Evolutionary Computing · Computer Science 2019-03-27 Ahlem Aboud , Raja Fdhila , Adel M. Alimi

In this article an anisotropic interaction model avoiding collisions is proposed. Starting point is a general isotropic interacting particle system, as used for swarming or follower-leader dynamics. An anisotropy is induced by rotation of…

Analysis of PDEs · Mathematics 2020-08-17 Claudia Totzeck

We prove existence and uniqueness of global solutions for a class of reaction-advection-anisotropic-diffusion systems whose reaction terms have a "triangular structure". We thus extend previous results to the case of time-space dependent…

Analysis of PDEs · Mathematics 2016-02-10 Dieter Bothe , André Fischer , Michel Pierre , Guillaume Rolland

Passive reaction effects in grasp stability analysis occur when the contact forces and joint torques applied by a grasp change in response to external disturbances applied to the grasped object. For example, nonbackdrivable actuators (e.g.…

Robotics · Computer Science 2020-07-10 Maximilian Haas-Heger , Matei Ciocarlie

Understanding the asymptotic behavior of reaction-diffusion (RD) systems is crucial for modeling processes ranging from species coexistence in ecology to biochemical interactions within cells. In this work, we analyze RD systems in which…

Dynamical Systems · Mathematics 2025-02-18 Carlos Barajas , Jean-Jacques Slotine , Domitilla Del Vecchio

Distributed Constraint Optimization Problems (DCOPs) are an important framework for modeling coordinated decision-making problems in multi-agent systems with a set of discrete variables. Later works have extended DCOPs to model problems…

Multiagent Systems · Computer Science 2020-09-03 Saaduddin Mahmud , Md. Mosaddek Khan , Moumita Choudhury , Long Tran-Thanh , Nicholas R. Jennings

In many biological situations, a species arriving from a remote source diffuses in a domain confined between two parallel surfaces until it finds a binding partner. Since such a geometric shape falls in between two- and three-dimensional…

Chemical Physics · Physics 2019-11-05 Denis S. Grebenkov , Diego Krapf

Complex multidimensional stochastic dynamics can be approximately described as diffusion along reaction coordinates (RCs). If the RCs are optimally selected, the diffusive model allows one to compute important properties of the dynamics…

Chemical Physics · Physics 2023-04-12 Sergei V. Krivov

In the present work we investigate phase correlations by recourse to the Shannon entropy. Using theoretical arguments we show that the entropy provides an accurate measure of phase correlations in any dynamical system, in particular when…

Chaotic Dynamics · Physics 2019-10-24 P. M. Cincotta , C. M. Giordano

Effective dynamics using conditional expectation was proposed in [F. Legoll and T. Leli\`evre, Nonlinearity, 2010] to approximate the essential dynamics of high-dimensional diffusion processes along a given reaction coordinate. The…

Probability · Mathematics 2018-05-08 Tony Lelièvre , Wei Zhang

Trajectory optimization and model predictive control are essential techniques underpinning advanced robotic applications, ranging from autonomous driving to full-body humanoid control. State-of-the-art algorithms have focused on data-driven…

Systems and Control · Electrical Eng. & Systems 2021-11-15 Hany Abdulsamad , Tim Dorau , Boris Belousov , Jia-Jie Zhu , Jan Peters

We extend a well-studied ODE model for collective behaviour by considering anisotropic interactions among individuals. Anisotropy is modelled by limited sensorial perception of individuals, that depends on their current direction of motion.…

Classical Analysis and ODEs · Mathematics 2014-06-05 Joep H. M. Evers , Razvan C. Fetecau , Lenya Ryzhik