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We introduce QCLAB, an object-oriented MATLAB toolbox for constructing, representing, and simulating quantum circuits. Designed with an emphasis on numerical stability, efficiency, and performance, QCLAB provides a reliable platform for…

Quantum Physics · Physics 2025-03-06 Sophia Keip , Daan Camps , Roel Van Beeumen

The `equation-free toolbox' empowers the computer-assisted analysis of complex, multiscale systems. Its aim is to enable you to immediately use microscopic simulators to perform macro-scale system level tasks and analysis, because…

Mathematical Software · Computer Science 2020-04-08 John Maclean , J. E. Bunder , A. J. Roberts

Multiplexed imaging data are revolutionizing our understanding of the composition and organization of tissues and tumors. A critical aspect of such tissue profiling is quantifying the spatial relationship relationships among cells at…

Quantitative Methods · Quantitative Biology 2024-05-06 Ajit J. Nirmal , Peter K. Sorger

Developing intuition about quantum information theory problems is difficult, as is verifying or ruling-out of hypothesis. We present a Matlab package intended to provide the QIT community with a new and powerful tool-set for quantum…

Quantum Physics · Physics 2007-08-06 Shai Machnes

In the era of gravitational-wave astronomy, general-relativistic simulations of compact objects play a role of paramount importance. These calculations can be performed with the Einstein Toolkit, an open-source and community-supported…

General Relativity and Quantum Cosmology · Physics 2021-04-20 Gabriele Bozzola

We introduce SciEvalKit, a unified benchmarking toolkit designed to evaluate AI models for science across a broad range of scientific disciplines and task capabilities. Unlike general-purpose evaluation platforms, SciEvalKit focuses on the…

As data science and machine learning methods are taking on an increasingly important role in the materials research community, there is a need for the development of machine learning software tools that are easy to use (even for nonexperts…

Computational Physics · Physics 2020-06-26 Ryan Jacobs , Tam Mayeshiba , Ben Afflerbach , Luke Miles , Max Williams , Matthew Turner , Raphael Finkel , Dane Morgan

We present the Open MatSci ML Toolkit: a flexible, self-contained, and scalable Python-based framework to apply deep learning models and methods on scientific data with a specific focus on materials science and the OpenCatalyst Dataset. Our…

Machine Learning · Computer Science 2023-09-01 Santiago Miret , Kin Long Kelvin Lee , Carmelo Gonzales , Marcel Nassar , Matthew Spellings

Braidlab is a Matlab package for analyzing data using braids. It was designed to be fast, so it can be used on relatively large problems. It uses the object-oriented features of Matlab to provide a class for braids on punctured disks and a…

Geometric Topology · Mathematics 2019-11-18 Jean-Luc Thiffeault , Marko Budisic

The CMAP (cultural mapping and pattern analysis) visualization toolkit introduced in this paper is an open-source suite for analyzing and visualizing text data - from qualitative fieldnotes and in-depth interview transcripts to historical…

Applications · Statistics 2025-10-21 Corey M. Abramson , Yuhan , Nian

The Imaging Computational Microscope (ICM) is a suite of computational tools for automated analysis of functional imaging data that runs under the cross-platform MATLAB environment (The Mathworks, Inc.). ICM uses a semi-supervised…

Neurons and Cognition · Quantitative Biology 2015-02-26 E. Paxon Frady , William B. Kristan

This paper reports on Matlab Channel Access (MCA) Toolbox Matlab [1] interface to Epics Channel Access (CA) client library. We are developing the toolbox for SPEAR3 accelerator controls but it is of general use for accelerator and…

Accelerator Physics · Physics 2007-05-23 Andrei Terebilo

A wide range of scientific imaging datasets benefit from human inspection for purposes ranging from prosaic-such as fault identification and quality inspection-to profound, enabling the discovery of new phenomena. As such, these datasets…

Instrumentation and Methods for Astrophysics · Physics 2025-07-04 Ryan Walker , Andi Kisare , Lindsey Bleem

\textbf{FlexBox} is a flexible MATLAB toolbox for finite dimensional convex variational problems in image processing and beyond. Such problems often consist of non-differentiable parts and involve linear operators. The toolbox uses a…

Optimization and Control · Mathematics 2016-07-21 Hendrik Dirks

A MATLAB toolbox is presented, with the goal of checking occurrences of design errors typically found in fixed-point digital systems, considering finite word-length effects. In particular, the present toolbox works as a front-end to a…

Systems and Control · Computer Science 2017-02-21 Lennon Chaves , Iury Bessa , Lucas Cordeiro , Daniel Kroening , Eddie Filho

Scikit-network is a Python package inspired by scikit-learn for the analysis of large graphs. Graphs are represented by their adjacency matrix in the sparse CSR format of SciPy. The package provides state-of-the-art algorithms for ranking,…

Social and Information Networks · Computer Science 2020-09-17 Thomas Bonald , Nathan de Lara , Quentin Lutz , Bertrand Charpentier

Large Language Models (LLMs) have become ubiquitous in everyday life and are entering higher-stakes applications ranging from summarizing meeting transcripts to answering doctors' questions. As was the case with earlier predictive models,…

This is the User Manual of the LASPATED library. This library is available on GitHub (at https://github.com/vguigues/LASPATED)) and provides a set of tools to analyze spatiotemporal data. A video tutorial for this library is available on…

Background Clinical trials are essential to advancing cancer treatments, yet fewer than 10% of adults with cancer enroll in trials, and many studies fail to meet accrual targets. Artificial intelligence (AI) could improve identification of…

MADlib is a free, open source library of in-database analytic methods. It provides an evolving suite of SQL-based algorithms for machine learning, data mining and statistics that run at scale within a database engine, with no need for data…