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We develop a theory of graph algebras over general fields. This is modeled after the theory developed by Freedman, Lov\'asz and Schrijver in [22] for connection matrices, in the study of graph homomorphism functions over real edge weight…

An independent set $I$ in a graph $G$ is maximal if $I$ is not properly contained in any other independent set of $G$. The study of maximal independent sets (MIS's) in various graphs is well-established, often focusing upon enumeration of…

The \emph{maximum a posteriori} (MAP) assignment for general structure Markov random fields (MRFs) is computationally intractable. In this paper, we exploit tree-based methods to efficiently address this problem. Our novel method, named…

The goal of this paper is to provide a general purpose result for the coupling of exploration processes of random graphs, both undirected and directed, with their local weak limits when this limit is a marked Galton-Watson process. This…

Consider a low temperature stochastic Ising model in the phase coexistence regime with Markov semigroup $P_t$. A fundamental and still largely open problem is the understanding of the long time behavior of $\d_\h P_t$ when the initial…

This paper considers the problem of defining distributions over graphical structures. We propose an extension of the hyper Markov properties of Dawid and Lauritzen [Ann. Statist. 21 (1993) 1272-1317], which we term structural Markov…

We show that many graphs with bounded treewidth can be described as subgraphs of the strong product of a graph with smaller treewidth and a bounded-size complete graph. To this end, define the "underlying treewidth" of a graph class…

Many data are naturally modeled by an unobserved hierarchical structure. In this paper we propose a flexible nonparametric prior over unknown data hierarchies. The approach uses nested stick-breaking processes to allow for trees of…

The purpose of this article is to show how the isotropy subgroup of leaf permutations on binary trees can be used to systematically identify tree-informative invariants relevant to models of phylogenetic evolution. In the quartet case, we…

Given a graph, we can form a spanning forest by first sorting the edges in some order, and then only keep edges incident to a vertex which is not incident to any previous edge. The resulting forest is dependent on the ordering of the edges,…

We give a complete criterion for when two hyperbolic automorphisms of a tree generate a free, discrete subgroup. The decision depends only on three geometric invariants: the translation lengths of the generators and the length of overlap of…

Frequent pattern mining is a relevant method to analyse structured data, like sequences, trees or graphs. It consists in identifying characteristic substructures of a dataset. This paper deals with a new type of patterns for tree data:…

We construct discrete holomorphic observables in the Ising model at criticality and show that they have conformally covariant scaling limits (as mesh of the lattice tends to zero). In the sequel those observables are used to construct…

We show that several new classes of groups are measure strongly treeable. In particular, finitely generated groups admitting planar Cayley graphs, elementarily free groups, and the group of isometries of the hyperbolic plane and all its…

We consider the phylogenetic tree model in which every node of the tree is observed and binary and the transitions are given by the same matrix on each edge of the tree. We are able to compute the Grobner basis and Markov basis of the toric…

One of the common obstacles for learning causal models from data is that high-order conditional independence (CI) relationships between random variables are difficult to estimate. Since CI tests with conditioning sets of low order can be…

Consider the problem of learning undirected graphical models on trees from corrupted data. Recently Katiyar et al. showed that it is possible to recover trees from noisy binary data up to a small equivalence class of possible trees. Their…

Let $T$ be a tree, we show that the null space of the adjacency matrix of $T$ has relevant information about the structure of $T$. We introduce the Null Decomposition of trees, and use it in order to get formulas for independence number and…

The aim of this chapter is to provide an adequate graph theoretic framework for the description of periodic bifurcations which have recently been discovered in descendant trees of finite p-groups. The graph theoretic concepts of rooted…

A directed acyclic graph (DAG) partially represents the conditional independence structure among observations of a system if the local Markov condition holds, that is, if every variable is independent of its non-descendants given its…