Related papers: UPGMA and the normalized equidistant minimum evolu…
We study the problem of partitioning a set of $n$ objects in a metric space into $k$ clusters $V_1,\dots,V_k$. The quality of the clustering is measured by considering the vector of cluster costs and then minimizing some monotone symmetric…
Clustering is a popular form of unsupervised learning for geometric data. Unfortunately, many clustering algorithms lead to cluster assignments that are hard to explain, partially because they depend on all the features of the data in a…
The unit commitment (UC) problem is a nonlinear, high-dimensional, highly constrained, mixed-integer power system optimization problem and is generally solved in the literature considering minimizing the system operation cost as the only…
Mean field inference in probabilistic models is generally a highly nonconvex problem. Existing optimization methods, e.g., coordinate ascent algorithms, can only generate local optima. In this work we propose provable mean filed methods for…
Networked data, in which every training example involves two objects and may share some common objects with others, is used in many machine learning tasks such as learning to rank and link prediction. A challenge of learning from networked…
A classic problem in unsupervised learning and data analysis is to find simpler and easy-to-visualize representations of the data that preserve its essential properties. A widely-used method to preserve the underlying hierarchical structure…
We study the multi-objective minimum weight base problem, an abstraction of classical NP-hard combinatorial problems such as the multi-objective minimum spanning tree problem. We prove some important properties of the convex hull of the…
In this paper, we introduce the Fixed Topology Minimum-Length Tree with Neighborhood Problem, which aims to embed a rooted tree-shaped graph into a $d$-dimensional metric space while minimizing its total length provided that the nodes must…
Motivated by the problem of matching two correlated random geometric graphs, we study the problem of matching two Gaussian geometric models correlated through a latent node permutation. Specifically, given an unknown permutation $\pi^*$ on…
A phylogenetic tree is a way to organize a finite set of species, individuals or other sources of related data. The species for which we have existing DNA data make up the set of leaves of the tree. The balanced minimal evolution method of…
We prove that there is a randomized polynomial-time algorithm that given an edge-weighted graph $G$ excluding a fixed-minor $Q$ on $n$ vertices and an accuracy parameter $\varepsilon>0$, constructs an edge-weighted graph~$H$ and an…
In phylogenetics, a central problem is to infer the evolutionary relationships between a set of species $X$; these relationships are often depicted via a phylogenetic tree -- a tree having its leaves univocally labeled by elements of $X$…
{\em Reoptimization} is a setting in which we are given an (near) optimal solution of a problem instance and a local modification that slightly changes the instance. The main goal is that of finding an (near) optimal solution of the…
The Neighbor-Joining algorithm is a popular distance-based phylogenetic method that computes a tree metric from a dissimilarity map arising from biological data. Realizing dissimilarity maps as points in Euclidean space, the algorithm…
Non-orthogonal multiple access (NOMA) has been considered one of the most promising radio access techniques for next-generation cellular networks. In this paper, we study the joint user and power scheduling for downlink NOMA over fading…
This paper describes algorithms for nonnegative matrix factorization (NMF) with the beta-divergence (beta-NMF). The beta-divergence is a family of cost functions parametrized by a single shape parameter beta that takes the Euclidean…
We present a general technique, based on parametric search with some twist, for solving a variety of optimization problems on a set of semi-algebraic geometric objects of constant complexity. The common feature of these problems is that…
Motivated by applications in social and biological network analysis, we introduce a new form of agnostic clustering termed~\emph{motif correlation clustering}, which aims to minimize the cost of clustering errors associated with both edges…
Together with the NSGA-II and SMS-EMOA, the strength Pareto evolutionary algorithm 2 (SPEA2) is one of the most prominent dominance-based multi-objective evolutionary algorithms (MOEAs). Different from the NSGA-II, it does not employ the…
In this paper, we consider a class of nonconvex (not necessarily differentiable) optimization problems called generalized DC (Difference-of-Convex functions) programming, which is minimizing the sum of two separable DC parts and one…