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Protein language models (PLMs) have shown promise in improving the understanding of protein sequences, contributing to advances in areas such as function prediction and protein engineering. However, training these models from scratch…

Machine Learning · Computer Science 2024-12-19 Shivasankaran Vanaja Pandi , Bharath Ramsundar

Partial differential equation (PDE) solvers are extensively utilized across numerous scientific and engineering fields. However, achieving high performance and scalability often necessitates intricate and low-level programming, particularly…

Distributed, Parallel, and Cluster Computing · Computer Science 2023-09-12 Huanqi Cao , Shizhi Tang , Qianchao Zhu , Bowen Yu , Wenguang Chen

Domain specific languages (DSL) have been used in a variety of fields to express complex scientific problems in a concise manner and provide automated performance optimization for a range of computational architectures. As such DSLs provide…

Domain-specific languages (DSLs) are both pervasive and powerful, but remain difficult to integrate into large projects. As a result, while DSLs can bring distinct advantages in performance, reliability, and maintainability, their use often…

Programming Languages · Computer Science 2020-10-19 Hal Finkel , Alexander McCaskey , Tobi Popoola , Dmitry Lyakh , Johannes Doerfert

A novel adaptive technique for electromagnetic Particle In Cell (PIC) plasma simulations is presented here. Two main issues are identified in designing adaptive techniques for PIC simulation: first, the choice of the size of the particle…

Plasma Physics · Physics 2015-06-04 M. E. Innocenti , G. Lapenta , S. Markidis , A. Beck , A. Vapirev

In model-driven engineering, developing a textual domain-specific language (DSL) involves constructing a meta-model, which defines an underlying abstract syntax, and a grammar, which defines the concrete syntax for the DSL. Language…

Software Engineering · Computer Science 2024-02-01 Weixing Zhang , Jörg Holtmann , Daniel Strüber , Regina Hebig , Jan-Philipp Steghöfer

Solving partial differential equations (PDEs) on complex domains can present significant computational challenges. The Diffuse Domain Method (DDM) is an alternative that reformulates the partial differential equations on a larger, simpler…

Numerical Analysis · Mathematics 2025-07-24 Luke Benfield , Andreas Dedner

A domain specific language (DSL), named MotePy is presented. The DSL offers a high level syntax with low overheads for ML/data processing in time constrained or memory constrained systems. The DSL-to-C compiler has a novel static memory…

Programming Languages · Computer Science 2020-11-13 Jayaraj Poroor

Parallel programs in high performance computing (HPC) continue to grow in complexity and scale in the exascale era. The diversity in hardware and parallel programming models make developing, optimizing, and maintaining parallel software…

Distributed, Parallel, and Cluster Computing · Computer Science 2024-05-15 Daniel Nichols , Aniruddha Marathe , Harshitha Menon , Todd Gamblin , Abhinav Bhatele

Process modeling is usually done using imperative modeling languages like BPMN or EPCs. In order to cope with the complexity of human-centric and flexible business processes several declarative process modeling languages (DPMLs) have been…

Software Engineering · Computer Science 2016-03-22 Lars Ackermann , Stefan Schönig , Stefan Jablonski

The capabilities of Large Language Models (LLMs) are limited to some extent by pre-training, so some researchers optimize LLMs through post-training. Existing post-training strategies, such as memory-based retrieval or preference…

Computation and Language · Computer Science 2025-07-22 Haoran Sun , Zekun Zhang , Shaoning Zeng

When a domain specific language (DSL) shall be commonly used, it is important for the development team to have a comfortable editor well integrated in the project's development environment. As DSL are rather often subject to changes,…

Software Engineering · Computer Science 2014-09-24 Holger Krahn , Bernhard Rumpe , Steven Völkel

Data analysis is at the core of scientific studies, a prominent task that researchers and practitioners typically undertake by programming their own set of automated scripts. While there is no shortage of tools and languages available for…

Software Engineering · Computer Science 2019-04-23 Artur Andrzejak , Oliver Wenz , Diego Costa

Context. Software development pipelines are used for automating essential parts of software engineering processes, such as build automation and continuous integration testing. In particular, interactive pipelines, which process events in a…

Programming Languages · Computer Science 2018-04-20 Gabriël Konat , Michael J. Steindorfer , Sebastian Erdweg , Eelco Visser

Domain specific languages (DSLs) are increasingly used today. Coping with complex language definitions, evolving them in a structured way, and ensuring their error freeness are the main challenges of DSL design and implementation. The use…

Software Engineering · Computer Science 2014-09-09 Holger Krahn , Bernhard Rumpe , Stefan Völkel

Security engineering, from security requirements engineering to the implementation of cryptographic protocols, is often supported by domain-specific languages (DSLs). Unfortunately, a lack of knowledge about these DSLs, such as which…

Cryptography and Security · Computer Science 2026-04-15 Markus Krausz , Sven Peldszus , Francesco Regazzoni , Thorsten Berger , Tim Güneysu

Context: Computational notebooks are a contemporary style of literate programming, in which users can communicate and transfer knowledge by interleaving executable code, output, and prose in a single rich document. A Domain-Specific…

Programming Languages · Computer Science 2020-02-17 Mauricio Verano Merino , Jurgen Vinju , Tijs van der Storm

Numerical simulations can help solve complex problems. Most of these algorithms are massively parallel and thus good candidates for FPGA acceleration thanks to spatial parallelism. Modern FPGA devices can leverage high-bandwidth memory…

Hardware Architecture · Computer Science 2022-11-09 Stephanie Soldavini , Karl F. A. Friebel , Mattia Tibaldi , Gerald Hempel , Jeronimo Castrillon , Christian Pilato

To keep a DSL clean, readable and reusable in different contexts, it is useful to define a separate tagging language. A tag model logically adds information to the tagged DSL model while technically keeping the artifacts separated. Using a…

Software Engineering · Computer Science 2016-06-17 Timo Greifenberg , Markus Look , Sebastian Roidl , Bernhard Rumpe

Large language models (LLMs) have taken the world by storm by making many previously difficult uses of AI feasible. LLMs are controlled via highly expressive textual prompts and return textual answers. Unfortunately, this unstructured text…

Artificial Intelligence · Computer Science 2024-10-28 Mandana Vaziri , Louis Mandel , Claudio Spiess , Martin Hirzel