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A novel method combining maximum entropy principle, the Bayesian-inference of ensembles approach, and the optimization of empirical forward models is presented. Here we focus on the Karplus parameters for RNA systems, which relate the…

Chemical Physics · Physics 2023-06-06 Thorben Fröhlking , Mattia Bernetti , Giovanni Bussi

We investigate the dynamical stability of the Kepler-60 planetary system with three super-Earths. We first determine their orbital elements and masses by Transit Timing Variation (TTV) data spanning quarters Q1-Q16 of the KEPLER mission.…

Earth and Planetary Astrophysics · Physics 2015-11-18 Krzysztof Gozdziewski , Cezary Migaszewski , Federico Panichi , Ewa Szuszkiewicz

This paper presents a mass-lumped Virtual Element Method (VEM) with explicit Strong Stability-Preserving Runge--Kutta (SSP-RK) time integration for two-dimensional parabolic problems on general polygonal meshes. A diagonal mass matrix is…

Numerical Analysis · Mathematics 2026-03-10 Paulo Akira F. Enabe , Rodrigo Provasi

Reduced density matrix functional theory (RDMFT) and coupled cluster theory restricted to paired double excitations (pCCD) are emerging as efficient methodologies for accounting for the so-called non-dynamic electronic correlation effects.…

We consider a randomised implementation of the finite element method (FEM) for elliptic partial differential equations on high-dimensional models. This is motivated by applications where model predictions are essential for real-time process…

Numerical Analysis · Mathematics 2019-07-30 Yue Wu , Dimitris Kamilis , Nick Polydorides

The transition between a regime in which thermodynamic relations apply only to ensembles of small systems coupled to a large environment and a regime in which they can be used to characterize individual macroscopic systems is analyzed in…

Statistical Mechanics · Physics 2015-05-30 Alberto Suárez , Robert Silbey , Irwin Oppenheim

Numerical solutions to Newton's equations of motion for chaotic self gravitating systems of more than 2 bodies are often regarded to be irreversible. This is due to the exponential growth of errors introduced by the integration scheme and…

Instrumentation and Methods for Astrophysics · Physics 2018-03-14 Simon Portegies Zwart , Tjarda Boekholt

In this work, we introduce a self-adaptive implicit-explicit (IMEX) time integration scheme, named IMEX-RB, for the numerical integration of systems of ordinary differential equations (ODEs), arising from spatial discretizations of partial…

Numerical Analysis · Mathematics 2025-07-28 Micol Bassanini , Simone Deparis , Francesco Sala , Riccardo Tenderini

We show that when time-reversible symplectic algorithms are used to solve periodic motions, the energy error after one period is generally two orders higher than that of the algorithm. By use of correctable algorithms, we show that the…

Mathematical Physics · Physics 2009-11-10 S. R. Scuro , S. A. Chin

The Expectation--Maximization (EM) algorithm is a simple meta-algorithm that has been used for many years as a methodology for statistical inference when there are missing measurements in the observed data or when the data is composed of…

Machine Learning · Statistics 2022-11-15 Hideitsu Hino , Shotaro Akaho , Noboru Murata

Recent developments in computational power and machine learning techniques motivate their use in many different astrophysical research areas. Consequently, many machine learning models have been trained to classify exoplanet transit signals…

Earth and Planetary Astrophysics · Physics 2025-12-10 Ayan Bin Rafaih , Zachary Murray

Tacho-less rotational speed estimation is critical for vibration-based prognostics and health management (PHM) of rotating machinery, yet traditional methods--such as time-domain periodicity, cepstrum, and harmonic comb matching--struggle…

Signal Processing · Electrical Eng. & Systems 2026-04-01 Weiheng Hua , Changyu Hao

Based on continuously recorded beam positions and corrector excitations from, for example, a closed-orbit feedback system we describe an algorithm that continuously updates an estimate of the orbit response matrix. The speed of convergence…

Accelerator Physics · Physics 2021-07-28 Ingvar Ziemann , Volker Ziemann

Numerous multi- or high-dimensional indexes with distinct advantages have been proposed on various platforms to meet application requirements. To achieve higher-performance queries, most indexes employ enhancement methods, including…

Databases · Computer Science 2025-10-24 Ming Sheng , Shuliang Wang , Yong Zhang , Yi Luo , Xianbo Liu , Zeming Li

Very often when studying non-equilibrium systems one is interested in analysing dynamical behaviour that occurs with very low probability, so called rare events. In practice, since rare events are by definition atypical, they are often…

Statistical Mechanics · Physics 2021-01-06 Dominic C. Rose , Jamie F. Mair , Juan P. Garrahan

Exponential tilting is a technique commonly used in fields such as statistics, probability, information theory, and optimization to create parametric distribution shifts. Despite its prevalence in related fields, tilting has not seen…

Machine Learning · Computer Science 2023-06-02 Tian Li , Ahmad Beirami , Maziar Sanjabi , Virginia Smith

Transport and mixing properties of aperiodic flows are crucial to a dynamical analysis of the flow, and often have to be carried out with limited information. Finite-time coherent sets are regions of the flow that minimally mix with the…

Dynamical Systems · Mathematics 2018-02-12 Gary Froyland , Oliver Junge

The Kepler Space Telescope has discovered thousands of planets via the transit method. The transit timing variations of these planets allows us not only to infer the existence of other planets, transiting or not, but to characterize a…

Earth and Planetary Astrophysics · Physics 2018-10-24 Chris Fox , Paul Wiegert

Recurrence is a fundamental property of dynamical systems, which can be exploited to characterise the system's behaviour in phase space. A powerful tool for their visualisation and analysis called recurrence plot was introduced in the late…

Chaotic Dynamics · Physics 2025-01-27 Norbert Marwan , Maria Carmen Romano , Marco Thiel , Jürgen Kurths

The training of deep residual neural networks (ResNets) with backpropagation has a memory cost that increases linearly with respect to the depth of the network. A way to circumvent this issue is to use reversible architectures. In this…

Machine Learning · Computer Science 2021-07-23 Michael E. Sander , Pierre Ablin , Mathieu Blondel , Gabriel Peyré