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Related papers: pH dependence of charge multipole moments in prote…

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Tuning of protein surface charge is a fundamental mechanism in biological systems. Protein charge is regulated in a physiological context by pH and interaction with counterions. We report on charge inversion and the related reentrant…

Soft Condensed Matter · Physics 2013-05-29 Felix Roosen-Runge , Benjamin S. Heck , Fajun Zhang , Oliver Kohlbacher , Frank Schreiber

The importance of electrostatic interactions in soft matter and biological systems can often be traced to non-uniform charge effects, which are commonly described using a multipole expansion of the corresponding charge distribution. The…

Soft Condensed Matter · Physics 2018-04-23 Anže Lošdorfer Božič

As proteins typically have charges of around 10, they will interact strongly with charged surfaces. We calculate the electrostatic contribution to the interaction of crystals of protein with charged surfaces. The surfaces repel like-charged…

Soft Condensed Matter · Physics 2009-11-10 Richard P. Sear

Electrostatic interactions fundamentally govern the structure, stability, and dynamics of charged (bio)matter, yet the impact of heterogeneous and anisotropic charge distributions on the behavior of protein solutions remains elusive. Here,…

We suggest to augment standard isoelectronic focusing for separation of proteins in a gradient of pH by a similar focusing in the presence of a strongly charged polyelectrolyte (PE). Proteins which have the same isoelectric point but…

Condensed Matter · Physics 2009-11-07 E. M. Baskin , B. I. Shklovskii , G. V. Zilberstein

Charge regulation is an important aspect of electrostatics in biological and colloidal systems, where the charges are generally not fixed, but depend on the environmental variables. Here, we analyze the charge regulation mechanism in…

Soft Condensed Matter · Physics 2018-08-01 Anže Lošdorfer Božič , Rudolf Podgornik

Proteins change their charge state through protonation and redox reactions as well as through binding charged ligands. The free energy of these reactions are dominated by solvation and electrostatic energies and modulated by protein…

Biomolecules · Quantitative Biology 2016-02-26 Marilyn R. Gunner , Nathan A. Baker

Protein electrostatics have been demonstrated to play a vital role in protein functionality, with many functionally important amino acid residues exhibiting an electrostatic state that is altered from that of a normal amino acid residue.…

Biomolecules · Quantitative Biology 2008-10-13 Christopher M. Frenz

To better understand protein-solvent interaction we have analyzed a variety of physical and geometrical properties of the solvent-excluded surfaces (SESs) over a large set of soluble proteins with crystal structures. We discover that all…

Biomolecules · Quantitative Biology 2016-05-05 Lincong Wang

Numerical simulations of hydrated proteins show that protein hydration shells are polarized into a ferroelectric cluster with a large magnitude of its average dipole moment. The emergence of this new mesophase dramatically alters the…

Biological Physics · Physics 2010-06-02 David N. LeBard , Dmitry V. Matyushov

Acid-base equilibria directly influence the functionality and behavior of particles in a system. Due to the ionizing effects of acid-base functional groups, particles will undergo charge exchange. The degree of ionization and their…

Soft Condensed Matter · Physics 2023-10-10 Leticia López-Flores , Monica Olvera de la Cruz

The electrostatic interaction of metal nanoparticles with viruses is attracting great interest due to their antiviral activity and their role in enhancing the detection of viruses at ultra-low concentrations. We model the MS2 virus devoid…

Soft Condensed Matter · Physics 2019-06-26 Anh D. Phan , Trinh X. Hoang

Understanding the molecular mechanisms driving the binding between bio-molecules is a crucial challenge in molecular biology. In this respect, characteristics like the preferentially hydrophobic composition of the binding interfaces, the…

The paper presents an analytical theory and numerical simulations of the dipolar response of hydrated proteins. The effective dielectric constant of the solvated protein, representing the average dipole moment induced at the protein by a…

Biological Physics · Physics 2015-05-30 Dmitry V. Matyushov

We study the electrical double layer at the interface between a protein crystal and a salt solution or a dilute solution of protein, and estimate the double layer's contribution to the interfacial tension of this interface. This…

Soft Condensed Matter · Physics 2009-11-07 R. P. Sear , P. B. Warren

Electrostatic interaction is the driving force for the encapsulation by virus coat proteins of nanoparticles such as quantum dots, gold particles and magnetic beads for, e.g., imaging and therapeutic purposes. In recent experimental work,…

Biological Physics · Physics 2015-06-11 Hsiang-Ku Lin , Paul van der Schoot , Roya Zandi

We have theoretically studied the uptake of a non-uniformly charged biomolecule, suitable to represent a globular protein or a drug, by a charged hydrogel carrier in the presence of a 1:1 electrolyte. Based on the analysis of a physical…

Soft Condensed Matter · Physics 2017-04-26 Irene Adroher-Benitez , Arturo Moncho-Jorda , Joachim Dzubiella

The encapsulation of polyanions, whether single-stranded RNAs or synthetic polymers, is primarily driven by attractive electrostatic interactions between the positively charged, structurally disordered RNA-binding domains of virus coat…

Biological Physics · Physics 2025-01-24 Mohammadamin Safdari , Siyu Li , Sanaz Panahandeh , Paul van der Schoot , Roya Zandi

We present general arguments for the importance, or lack thereof, of the structure in the charge distribution of counterions for counterion-mediated interactions between bounding symmetrically charged surfaces. We show that on the mean…

Soft Condensed Matter · Physics 2015-05-13 M. Kanduc , A. Naji , Y. S. Jho , P. A. Pincus , R. Podgornik

A simple extension of existing models for protein crystallisation is described, in which salt ions and charge neutrality are explicitly incorporated. This provides a straightforward explanation for the shape of protein crystallisation…

Soft Condensed Matter · Physics 2007-05-23 Patrick B. Warren
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