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Existing biomedical benchmarks do not provide end-to-end infrastructure for training, evaluation, and inference of models that integrate multimodal biological data and a broad range of machine learning tasks in therapeutics. We present…

Machine Learning · Computer Science 2026-01-23 Alejandro Velez-Arce , Jesus Caraballo , Marinka Zitnik

This work introduces a new software package `Sesame' for the numerical computation of classical semiconductor equations. It supports 1 and 2-dimensional systems and provides tools to easily implement extended defects such as grain…

Applied Physics · Physics 2019-05-01 Benoit Gaury , Yubo Sun , Peter Bermel , Paul M. Haney

This paper proposes a method for solving multivariate regression and classification problems using piecewise linear predictors over a polyhedral partition of the feature space. The resulting algorithm that we call PARC (Piecewise Affine…

Machine Learning · Computer Science 2021-03-11 Alberto Bemporad

We present a novel class of methods to compute functions of matrices or their action on vectors that are suitable for parallel programming. Solving appropriate simple linear systems of equations in parallel (or computing the inverse of…

Numerical Analysis · Mathematics 2022-10-10 Sergio Blanes

Polylab is a MATLAB toolbox for multivariate polynomial scalars and polynomial matrices with a unified symbolic-numeric interface across CPU and GPU-oriented backends. The software exposes three aligned classes: MPOLY for CPU execution,…

Mathematical Software · Computer Science 2026-04-10 Yi-Shuai Niu , Shing-Tung Yau

Particle filtering is a numerical Bayesian technique that has great potential for solving sequential estimation problems involving non-linear and non-Gaussian models. Since the estimation accuracy achieved by particle filters improves as…

Computation · Statistics 2017-11-22 Jeyarajan Thiyagalingam , Lykourgos Kekempanos , Simon Maskell

When writing programs, people have the ability to tackle a new complex task by decomposing it into smaller and more familiar subtasks. While it is difficult to measure whether neural program synthesis methods have similar capabilities, we…

Machine Learning · Computer Science 2024-05-07 Kensen Shi , Joey Hong , Yinlin Deng , Pengcheng Yin , Manzil Zaheer , Charles Sutton

We report on the new functionality of the open-source Mathematica package FeynCalc relevant for multiloop calculations. In particular, we focus on such tasks as topology identification by means of the Pak algorithm, search for equivalent…

High Energy Physics - Phenomenology · Physics 2021-12-30 Vladyslav Shtabovenko

PHCpack is a large software package for solving systems of polynomial equations. The executable phc is menu driven and file oriented. This paper describes the development of phcpy, a Python interface to PHCpack. Instead of navigating…

Mathematical Software · Computer Science 2014-04-30 Jan Verschelde

Many numerical simulation tools have been developed and are on the market, but there is still a strong need for appropriate tools capable of simulating multi-field problems, especially in aeroacoustics. Therefore, openCFS provides an…

Computational Engineering, Finance, and Science · Computer Science 2026-01-12 Andreas Wurzinger , Patrick Heidegger , Stefan Schoder

For the investigation of higher order Feynman integrals, potentially with tensor structure, it is highly desirable to have numerical methods and automated tools for dedicated, but sufficiently 'simple' numerical approaches. We elaborate two…

High Energy Physics - Phenomenology · Physics 2011-03-03 Janusz Gluza , Krzysztof Kajda , Tord Riemann , Valery Yundin

\texttt{DiscoTEX} is a highly accurate numerical algorithm for computing numerical weak-form solutions to distributionally sourced partial differential equations (PDE)s. The aim of this second paper, succeeding \cite{da2024discotex}, is to…

Numerical Analysis · Mathematics 2024-11-22 Lidia J. Gomes Da Silva

Recently, a lot of papers proposed to use neural networks to approximately solve partial differential equations (PDEs). Yet, there has been a lack of flexible framework for convenient experimentation. In an attempt to fill the gap, we…

Machine Learning · Computer Science 2019-09-26 Alexander Koryagin , Roman Khudorozkov , Sergey Tsimfer

In this era of diverse and heterogeneous computer architectures, the programmability issues, such as productivity and portable efficiency, are crucial to software development and algorithm design. One way to approach the problem is to step…

Mathematical Software · Computer Science 2012-07-10 Mauro Bianco , Ugo Varetto

Sector decomposition in its practical aspect is a constructive method used to evaluate Feynman integrals numerically. We present a new program performing the sector decomposition and integrating the expression afterwards. The program can be…

High Energy Physics - Phenomenology · Physics 2011-04-20 M. Tentyukov , A. V. Smirnov

Seeking tighter relaxations of combinatorial optimization problems, semidefinite programming is a generalization of linear programming that offers better bounds and is still polynomially solvable. Yet, in practice, a semidefinite program is…

Optimization and Control · Mathematics 2023-11-17 Daniel Porumbel

This work presents a brief discussion and a plan towards the analytical solving of Partial Differential Equations (PDEs) using symbolic computing, as well as an implementation of part of this plan as the PDEtools software-package of…

General Relativity and Quantum Cosmology · Physics 2016-03-23 E. S. Cheb-Terrab , K. von Bulow

We propose a multi-index algorithm for the Monte Carlo (MC) discretization of a linear, elliptic PDE with affine-parametric input. We prove an error vs. work analysis which allows a multi-level finite-element approximation in the physical…

Numerical Analysis · Mathematics 2019-07-18 Josef Dick , Michael Feischl , Christoph Schwab

We present CODEV, a Matlab-based tool for verifying systems employing Model Predictive Control (MPC). The MPC solution is computed offline and modeled together with the physical system as a hybrid automaton, whose continuous dynamics may be…

Systems and Control · Computer Science 2018-04-10 Nicole Chan , Sayan Mitra

SfePy (Simple finite elements in Python) is a software for solving various kinds of problems described by partial differential equations in one, two or three spatial dimensions by the finite element method. Its source code is mostly (85\%)…

Mathematical Software · Computer Science 2019-08-20 Robert Cimrman , Vladimír Lukeš , Eduard Rohan