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Related papers: Multi-scale time-stepping in molecular dynamics

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In this paper, we study temporal splitting algorithms for multiscale problems. The exact fine-grid spatial problems typically require some reduction in degrees of freedom. Multiscale algorithms are designed to represent the fine-scale…

Numerical Analysis · Mathematics 2021-06-02 Yalchin Efendiev , Sai-Mang Pun , Petr N. Vabishchevich

In ecological studies of pattern formation, models of the competitive-diffusion type are generally singularly perturbed, and the numerical approximation of such models is challenging. In this paper, we present finite element discretization…

Numerical Analysis · Mathematics 2026-04-15 Xianping Li , Woinshet D. Mergia , Kailash C. Patidar

Recently, a large class of quantum non-Markovian piecewise dynamics for an open quantum system obeying closed evolution equations has been introduced [B. Vacchini, Phys. Rev. Lett. 117, 230401 (2016)]. These dynamics have been defined in…

Quantum Physics · Physics 2018-01-17 Salvatore Lorenzo , Francesco Ciccarello , G. Massimo Palma , Bassano Vacchini

We propose a microscopic simulation for quark many-body system based on molecular dynamics. Using color confinement and one-gluon exchange potentials together with the meson exchange potentials between quarks, we construct nucleons and…

Nuclear Theory · Physics 2009-10-31 Toshiki Maruyama , Tetsuo Hatsuda

The dynamics of free vibrations of a chain of atoms is investigated taking into account the retardation of interactions. It is shown that all oscillations of the circuit are damped. The dynamics of forced vibrations of this chain of atoms…

Statistical Mechanics · Physics 2021-04-13 A. Yu. Zakharov , M. A. Zakharov

Given the lack of an absolute time parameter in general relativistic systems, quantum cosmology often describes the expansion of the universe in terms of relational changes between two degrees of freedom, such as matter and geometry.…

General Relativity and Quantum Cosmology · Physics 2023-10-16 Luis Martinez , Martin Bojowald , Garrett Wendel

For many externally driven complex systems neither the noisy driving force, nor the internal dynamics are a priori known. Here we focus on systems for which the time dependent activity of a large number of components can be monitored,…

Statistical Mechanics · Physics 2008-12-02 Zoltan Eisler , Janos Kertesz , Soon-Hyung Yook , Albert-Laszlo Barabasi

Lack of knowledge about the detailed many-particle motion on the microscopic scale is a key issue in any theoretical description of a macroscopic experiment. For systems at or close to thermal equilibrium, statistical mechanics provides a…

Statistical Mechanics · Physics 2016-03-03 Peter Reimann

All-atom simulations can provide molecular-level insights into the dynamics of gas-phase, condensed-phase and surface processes. One important requirement is a sufficiently realistic and detailed description of the underlying intermolecular…

Chemical Physics · Physics 2022-06-15 K. Töpfer , M. Upadhyay , M. Meuwly

We reveal several distinct regimes of the relaxation dynamics of a small quantum system coupled to an environment within the plane of the dissipation strength and the reservoir temperature. This is achieved by discriminating between…

Quantum Physics · Physics 2015-06-17 D. M. Kennes , O. Kashuba , V. Meden

We present a new method for simulating Markovian jump processes with time-dependent transitions rates, which avoids the transformation of random numbers by inverting time integrals over the rates. It relies on constructing a sequence of…

Statistical Mechanics · Physics 2015-05-20 Viktor Holubec , Petr Chvosta , Mario Einax , Philipp Maass

A dynamical decoupling method is presented which is based on embedding a deterministic decoupling scheme into a stochastic one. This way it is possible to combine the advantages of both methods and to increase the suppression of undesired…

Quantum Physics · Physics 2007-05-23 Oliver Kern , Gernot Alber

We present a quantum algorithm to achieve higher-order transformations of Hamiltonian dynamics. Namely, the algorithm takes as input a finite number of queries to a black-box seed Hamiltonian dynamics to simulate a desired Hamiltonian. Our…

Quantum Physics · Physics 2024-06-13 Tatsuki Odake , Hlér Kristjánsson , Akihito Soeda , Mio Murao

We investigate the kinetic freeze out scenario of a nucleon gas through a finite layer. The in-medium mass modification of nucleons and it's impact on the freeze out process is studied. A considerable modification of the thermodynamical…

Nuclear Theory · Physics 2007-05-23 Sven Zschocke , Laszlo P. Csernai , Etele Molnár , Jaakko Manninen , Agnes Nyiri

Stochastic dynamical systems arise naturally across nearly all areas of science and engineering. Typically, a dynamical system model is based on some prior knowledge about the underlying dynamics of interest in which probabilistic features…

Computational Engineering, Finance, and Science · Computer Science 2021-09-03 Chao Yin , Xihaier Luo , Ahsan Kareem

We introduce an infinite particle system dynamics, which includes stochastic chemical kinetics models, the classical Kac model and free space movement. We study energy redistribution between two energy types (kinetic and chemical) in…

Mathematical Physics · Physics 2015-06-03 V. A. Malyshev

The output of molecular dynamics simulations is high-dimensional, and the degrees of freedom among the atoms are related in intricate ways. Therefore, a variety of analysis frameworks have been introduced in order to distill complex motions…

Biomolecules · Quantitative Biology 2019-08-06 Brooke E. Husic , Frank Noé

The powerful molecular dynamics (MD) simulation is basically based on a picture that the atoms experience classical-like trajectories under the exertion of classical force field determined by the quantum mechanically solved electronic…

Chemical Physics · Physics 2013-12-16 Wei Feng , Luting Xu , Xin-Qi Li , Weihai Fang

The interrelation of dynamic processes active on separated time-scales in glasses and viscous liquids is investigated using a model displaying two time-scale bifurcations both between fast and secondary relaxation and between secondary and…

Disordered Systems and Neural Networks · Physics 2015-03-19 Andrea Crisanti , Luca Leuzzi , Matteo Paoluzzi

Many physical and chemical processes in the condensed phase environment exhibit non-Markovian quantum dynamics. As such simulations are challenging on classical computers, we developed a variational quantum algorithm that is capable of…

Quantum Physics · Physics 2024-03-11 Peter L. Walters , Joachim Tsakanikas , Fei Wang