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In the rapidly evolving landscape of genomics, deep learning has emerged as a useful tool for tackling complex computational challenges. This review focuses on the transformative role of Large Language Models (LLMs), which are mostly based…

With strong expressive capabilities in Large Language Models(LLMs), generative models effectively capture sentiment structures and deep semantics, however, challenges remain in fine-grained sentiment classification across multi-lingual and…

Computation and Language · Computer Science 2024-11-28 Jie Wang , Yichen Wang , Zhilin Zhang , Jianhao Zeng , Kaidi Wang , Zhiyang Chen

Consumer research costs companies billions annually yet suffers from panel biases and limited scale. Large language models (LLMs) offer an alternative by simulating synthetic consumers, but produce unrealistic response distributions when…

Artificial Intelligence · Computer Science 2025-10-28 Benjamin F. Maier , Ulf Aslak , Luca Fiaschi , Nina Rismal , Kemble Fletcher , Christian C. Luhmann , Robbie Dow , Kli Pappas , Thomas V. Wiecki

Spoken language recognition (SLR) is the task of automatically identifying the language present in a speech signal. Existing SLR models are either too computationally expensive or too large to run effectively on devices with limited…

Computation and Language · Computer Science 2023-06-06 Oriol Nieto , Zeyu Jin , Franck Dernoncourt , Justin Salamon

Within the context of Graph Signal Processing (GSP), Graph Learning (GL) is concerned with the inference of the graph's underlying structure from nodal observations. However, real-world data often contains diverse information, necessitating…

Signal Processing · Electrical Eng. & Systems 2023-11-08 Mohamad H. Alizade , Aref Einizade , Jhony H. Giraldo

Variable names are critical for conveying intended program behavior. Machine learning-based program analysis methods use variable name representations for a wide range of tasks, such as suggesting new variable names and bug detection.…

Software Engineering · Computer Science 2021-12-07 Qibin Chen , Jeremy Lacomis , Edward J. Schwartz , Graham Neubig , Bogdan Vasilescu , Claire Le Goues

Most existing metric learning methods focus on learning a similarity or distance measure relying on similar and dissimilar relations between sample pairs. However, pairs of samples cannot be simply identified as similar or dissimilar in…

Machine Learning · Computer Science 2020-08-19 Lifeng Gu

The ability of large language models (LLMs) to interpret visual representations of data is crucial for advancing their application in data analysis and decision-making processes. This paper presents a novel synthetic dataset designed to…

Computation and Language · Computer Science 2024-09-05 Aneta Pawelec , Victoria Sara Wesołowska , Zuzanna Bączek , Piotr Sankowski

Single-cell RNA-sequencing (scRNA-seq) stands as a powerful tool for deciphering cellular heterogeneity and exploring gene expression profiles at high resolution. However, its high cost renders it impractical for extensive sample cohorts…

Large Language Models (LLMs) have recently demonstrated remarkable performance in various Natural Language Processing (NLP) applications, such as sentiment analysis, content generation, and personalized recommendations. Despite their…

Computation and Language · Computer Science 2024-12-10 Mahaman Sanoussi Yahaya Alassan , Jessica López Espejel , Merieme Bouhandi , Walid Dahhane , El Hassane Ettifouri

Identifying a reduced set of collective variables is critical for understanding atomistic simulations and accelerating them through enhanced sampling techniques. Recently, several methods have been proposed to learn these variables directly…

Computational Physics · Physics 2023-07-19 Luigi Bonati , Enrico Trizio , Andrea Rizzi , Michele Parrinello

Large language models (LLMs) have shown strong ability in generating rich representations across domains such as natural language processing and generation, computer vision, and multimodal learning. However, their application in biomedical…

Genomics · Quantitative Biology 2025-09-30 Luxuan Zhang , Douglas Jiang , Qinglong Wang , Haoqi Sun , Feng Tian

We demonstrate LLARS (LLM Assisted Research System), an open-source platform that bridges the gap between domain experts and developers for building LLM-based systems. It integrates three tightly connected modules into an end-to-end…

Artificial Intelligence · Computer Science 2026-05-12 Philipp Steigerwald , Mara Stieler , Jennifer Burghardt , Eric Rudolph , Jens Albrecht

Multimodal information retrieval (MMIR) has gained attention for its flexibility in handling text, images, or mixed queries and candidates. Recent breakthroughs in multimodal large language models (MLLMs) boost MMIR performance by…

Information Retrieval · Computer Science 2026-02-27 Dawei Su , Dongsheng Wang

Emerging topics in biomedical research are continuously expanding, providing a wealth of information about genes and their function. This rapid proliferation of knowledge presents unprecedented opportunities for scientific discovery and…

Genomics · Quantitative Biology 2024-12-25 Zhijian Chen , Chuan Hu , Min Wu , Qingqing Long , Xuezhi Wang , Yuanchun Zhou , Meng Xiao

Spaced repetition systems are fundamental to efficient learning and memory retention, but existing algorithms often struggle with semantic interference and personalized adaptation. We present LECTOR (\textbf{L}LM-\textbf{E}nhanced…

Computation and Language · Computer Science 2025-08-06 Jiahao Zhao

Synthetic data generation has emerged as an invaluable solution in scenarios where real-world data collection and usage are limited by cost and scarcity. Large language models (LLMs) have demonstrated remarkable capabilities in producing…

Machine Learning · Computer Science 2025-07-22 Anh Nguyen , Sam Schafft , Nicholas Hale , John Alfaro

Recent advances in self-supervised learning (SSL) using large models to learn visual representations from natural images are rapidly closing the gap between the results produced by fully supervised learning and those produced by SSL on…

Computer Vision and Pattern Recognition · Computer Science 2022-11-03 Weiyao Wang , Byung-Hak Kim , Varun Ganapathi

Objectives: The vast and complex nature of human genomic sequencing data presents challenges for effective analysis. This review aims to investigate the application of Natural Language Processing (NLP) techniques, particularly Large…

Genomics · Quantitative Biology 2025-02-28 Shuyan Cheng , Yishu Wei , Yiliang Zhou , Zihan Xu , Drew N Wright , Jinze Liu , Yifan Peng

Recent image degradation estimation methods have enabled single-image super-resolution (SR) approaches to better upsample real-world images. Among these methods, explicit kernel estimation approaches have demonstrated unprecedented…

Computer Vision and Pattern Recognition · Computer Science 2023-11-01 Royson Lee , Rui Li , Stylianos I. Venieris , Timothy Hospedales , Ferenc Huszár , Nicholas D. Lane
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