Related papers: DNA Origami and Unknotted A-trails in Torus Graphs
This paper is motivated by the following question: what are the unavoidable induced subgraphs of graphs with large treewidth? Aboulker et al. made a conjecture which answers this question in graphs of bounded maximum degree, asserting that…
A hole is a chordless cycle with at least four vertices. A hole is odd if it has an odd number of vertices. A dart is a graph which vertices $a, b, c, d, e$ and edges $ab, bc, bd, be, cd, de$. Dart-free graphs have been actively studied in…
For a genus-1 1-bridge knot in the 3-sphere, that is, a (1,1)-knot, a middle tunnel is a tunnel that is not an upper or lower tunnel for some (1,1)-position. Most torus knots have a middle tunnel, and non-torus-knot examples were obtained…
DNA nanoparticles with three-fold coordination have been observed to self-assemble in experiment into a network equivalent to the hexagonal (6.6.6) tiling, and a network equivalent to the 4.8.8 Archimedean tiling. Both networks are built…
We study the inference of network archaeology in growing random geometric graphs. We consider the root finding problem for a random nearest neighbor tree in dimension $d \in \mathbb{N}$, generated by sequentially embedding vertices…
A graph class is monotone if it is closed under taking subgraphs. It is known that a monotone class defined by finitely many obstructions has bounded treewidth if and only if one of the obstructions is a so-called tripod, that is, a…
The unknotting number of a knot is bounded from below by its slice genus. It is a well-known fact that the genera and unknotting numbers of torus knots coincide. In this note we characterize quasipositive knots for which the genus bound is…
Rooted acyclic graphs appear naturally when the phylogenetic relationship of a set $X$ of taxa involves not only speciations but also recombination, horizontal transfer, or hybridization, that cannot be captured by trees. A variety of…
We investigate the graphs formed from the vertices and creases of an origami pattern that can be folded flat along all of its creases. As we show, this is possible for a tree if and only if the internal vertices of the tree all have even…
DNA origami is a widely used method to construct nanostructures by self-assembling designed DNA strands. These structures are often used as "pegboards" for templated assembly of proteins, gold nanoparticles, aptamers, and other molecules,…
We study simple, knotted and linked torus windings that are made of tubes of finite thickness. Knots which have the shortest rope length are often denoted ideal structures. Conventionally, the ideal structure are found by rope shortening…
A rough structure theorem is proved for graphs $G$ containing no copy of a bounded degree tree $T$: from any such $G$, one can delete $o(|G||T|)$ edges in order to get a subgraph all of whose connected components have a cover of order…
We consider braids with repeating patterns inside arbitrary knots which provides a multi-parametric family of knots, depending on the "evolution" parameter, which controls the number of repetitions. The dependence of knot (super)polynomials…
We show that many graphs with bounded treewidth can be described as subgraphs of the strong product of a graph with smaller treewidth and a bounded-size complete graph. To this end, define the "underlying treewidth" of a graph class…
In this paper, we introduce the notion of a finite non-simple directed graph, called an ornated graph and initiate a study on ornated graphs. An ornated graph is a directed graph on $n$ vertices, denoted by $O_n(s_l)$, whose vertices are…
We present explicit infinite families of twisted torus knots that are not fibered. Our approach relies on an explicit formula for the Alexander polynomial derived in our previous work. We show that the leading coefficients of the Alexander…
Given a graph $G$ rooted at a vertex $r$ and weight functions, $\gamma, \tau: E(G) \rightarrow \mathbb{R}$, the generalized cable-trench problem (CTP) is to find a single spanning tree that simultaneously minimizes the sum of the total edge…
A {\em theta} is a graph made of three internally vertex-disjoint chordless paths $P_1 = a \dots b$, $P_2 = a \dots b$, $P_3 = a \dots b$ of length at least~2 and such that no edges exist between the paths except the three edges incident to…
Given graphs $F$ and $G$, a perfect $F$-tiling in $G$ is a collection of vertex-disjoint copies of $F$ in $G$ that together cover all the vertices in $G$. The study of the minimum degree threshold forcing a perfect $F$-tiling in a graph $G$…
A foundational result in origami mathematics is Kawasaki and Justin's simple, efficient characterization of flat foldability for unassigned single-vertex crease patterns (where each crease can fold mountain or valley) on flat material. This…