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Heterogeneous systems of active matter exhibit a range of complex emergent dynamical patterns. In particular, it is difficult to predict the properties of the mixed system based on its constituents. These considerations are particularly…

Soft Condensed Matter · Physics 2021-04-07 Shlomit Peled , Shawn D. Ryan , Sebastian Heidenreich , Markus Bar , Gil Ariel , Avraham Be'er

This thesis conducts an observational study into whether diuretics should be administered to ICU patients with sepsis when length of stay in the ICU and 30-day post-hospital mortality are considered. The central contribution of the thesis…

Applications · Statistics 2014-08-29 Daniele Ramazzotti

Cells grown in culture act as a model system for analyzing the effects of anticancer compounds, which may affect cell behavior in a cell cycle position-dependent manner. Cell synchronization techniques have been generally employed to…

Analysis of PDEs · Mathematics 2019-02-28 Pierre Gabriel , Shawn P. Garbett , Vito Quaranta , Darren R. Tyson , Glenn F. Webb

We demonstrate a method of concentrating and patterning of biological cells on a chip, exploiting the confluence of electric and thermal fields, without necessitating the use of any external heating or illuminating source. The technique…

Biological Physics · Physics 2019-05-16 Golak Kunti , Tarun Agarwal , Anandaroop Bhattacharya , Tapas Kumar Maiti , Suman Chakraborty

A novel piezoelectric, drop-on-demand (DOD) inkjet system has been developed and used to print L929 rat fibroblast cells. We investigate the survivability of the cells subjected to the large stresses during the printing process. These…

Biological Physics · Physics 2013-10-03 Er Qiang Li , Eng Khoon Tan , Sigurdur Tryggvi Thoroddsen

Photosynthetic eukaryotes show a remarkable variability in photosynthesis, including large differences in light harvesting proteins and pigment composition. In vivo circular spectropolarimetry enables us to probe the molecular architecture…

Biomolecules · Quantitative Biology 2018-08-27 C. H. Lucas Patty , Freek Ariese , Wybren Jan Buma , Inge Loes ten Kate , Rob J. M. van Spanning , Frans Snik

Bacteriophages are viruses infecting bacteria and archaea. Many phage species cause infections which lead to the certain death of the infected prokaryotic host cell and the release of a large batch of phage progeny, yet they have been able…

Populations and Evolution · Quantitative Biology 2019-12-24 Matthias M. Fischer

We numerically study the dynamic behavior under a symmetric shear flow of selected examples of concentrated phase emulsions with multi-core morphology confined within a microfluidic channel. A variety of new nonequilibrium steady states is…

Soft Condensed Matter · Physics 2020-12-07 A. Tiribocchi , A. Montessori , F. Bonaccorso , M. Lauricella , S. Succi

In this work, we study a model of the chemostat where the species are present in two forms, isolated bacteria and under an aggregated form like attached bacteria or bacteria in flocks. We show that our general model contains a lot of models…

Dynamical Systems · Mathematics 2012-03-13 Radhoaune Fekih-Salem , Jérôme Harmand , Claude Lobry , Alain Rapaport , Tewfik Sari

A system of a metastable phase with a pseudo continuous set of the heterogeneous centers is considered. An analytical theory for kinetics of decay of the metastable phase in such a system is constructed. The free energy of formation of a…

Condensed Matter · Physics 2007-05-23 V. Kurasov

Apoptosis is essential for numerous processes, such as development, resistance to infections, and suppression of tumorigenesis. Here, we investigate the influence of the nutrient sensing and longevity-assuring enzyme SIRT6 on the dynamics…

Quantitative Methods · Quantitative Biology 2017-11-22 Sergii Domanskyi , Justin W. Nicholatos , Joshua E. Schilling , Vladimir Privman , Sergiy Libert

It has been proposed that during the early steps in the origin of life, small droplets could have formed via the segregation of molecules from complex mixtures by phase separation. These droplets could have provided chemical reaction…

Biological Physics · Physics 2017-04-26 David Zwicker , Rabea Seyboldt , Christoph A. Weber , Anthony A. Hyman , Frank Jülicher

Animal cells in tissues are supported by biopolymer matrices, which typically exhibit highly nonlinear mechanical properties. While the linear elasticity of the matrix can significantly impact cell mechanics and functionality, it remains…

In this paper, we introduce a three-dimensional mathematical model of collagen contraction with microbuckling based on the two-dimensional model previously developed by the authors. The model both qualitatively and quantitatively replicates…

Cell Behavior · Quantitative Biology 2018-01-03 Emily Jennings Evans , John C. Dallon

The ability to cultivate the cyanobacterium Arhtrospira platensis in artificially lightened photobioreactors using high energetic efficiency (quasi-monochromatic) red LED was investigated. In order to reach the same maximal productivities…

Other Quantitative Biology · Quantitative Biology 2020-11-11 Bérangère Farges , Céline Laroche , Jean-François Cornet , Claude-Gilles Dussap

We present a generic mechanism by which reproducing microorganisms, with a diffusivity that depends on the local population density, can form stable patterns. It is known that a decrease of swimming speed with density can promote separation…

Populations and Evolution · Quantitative Biology 2010-07-13 M. E. Cates , D. Marenduzzo , I. Pagonabarraga , J. Tailleur

A model of multicellular systems with several types of cells is developed from the phase field model. The model is presented as a set of partial differential equations of the field variables, each of which expresses the shape of one cell.…

Biological Physics · Physics 2015-05-30 Makiko Nonomura

Density dependence is important in the ecology and evolution of microbial and cancer cells. Typically, we can only measure net growth rates, but the underlying density-dependent mechanisms that give rise to the observed dynamics can…

Populations and Evolution · Quantitative Biology 2025-06-04 Linh Huynh , Jacob G. Scott , Peter J. Thomas

Effective wound repair treatments rely on a clear picture of how cell proliferation and migration are coordinated during tissue restoration. Fibroblasts are key contributors to tissue restoration in the dermis, and modern imaging tools…

Cell Behavior · Quantitative Biology 2026-03-03 Erik Blom , Qiyao Peng , Leah Pomfret , Richard Mort , Stefan Engblom

Electron microscopy and X-ray diffraction studies of dormant E. coli cells revealed several forms of nucleoid condensation: quasi - nanocrystalline, quasi -liquid crystalline (or spore-like) and folded nucleosome - like structure. Of…