Related papers: Space-efficient K-MER algorithm for generalized su…
We study the integration of machine learning advice to improve upon traditional data structure designed for efficient search queries. Although there has been recent effort in improving the performance of binary search trees using machine…
We give a new successor data structure which improves upon the index size of the P\v{a}tra\c{s}cu-Thorup data structures, reducing the index size from $O(n w^{4/5})$ bits to $O(n \log w)$ bits, with optimal probe complexity. Alternatively,…
Modern neural network architectures use structured linear transformations, such as low-rank matrices, sparse matrices, permutations, and the Fourier transform, to improve inference speed and reduce memory usage compared to general linear…
This paper proposed a storing approach for trie structures, called coordinate hash trie. The basic idea is using a global hash table with a special hash function to store all edges of a trie. For a trie with $n$ nodes and an alphabet with…
Neighborhood algorithms may take a considerable percentage of computer time in discrete element methods (DEM). While the sort-and-sweep algorithm is ideal in some ways, as it only deal with particles whose relative positions change in one…
Ranking bit patterns -- finding the index of a given pattern in an ordered sequence -- is a major bottleneck scaling up numerical quantum many-body calculations, as fermionic and hard-core bosonic states translate naturally to bit patterns.…
Minimum Spanning Trees are a well-studied subset of graph problems. While classical algorithms have existed to solve these problems for decades, new variations and application areas are constantly being discovered. When dealing with large…
Algorithms for learning decision trees often include heuristic local-search operations such as (1) adjusting the threshold of a cut or (2) also exchanging the feature of that cut. We study minimizing the number of classification errors by…
Structured, or tabular, data is the most common format in data science. While deep learning models have proven formidable in learning from unstructured data such as images or speech, they are less accurate than simpler approaches when…
Suffix Array (SA) is a cardinal data structure in many pattern matching applications, including data compression, plagiarism detection and sequence alignment. However, as the volumes of data increase abruptly, the construction of SA is not…
In this paper we will describe a new approach on the well-known suffix-array algorithm using Big Table Data Technology. We will demonstrate how it is possible to refactor a well-known algorithm coupled by taking advantage of an…
We present an axiomatic framework for analyzing the algorithmic properties of decision trees. This framework supports the classification of decision tree problems through structural and ancestral constraints within a rigorous mathematical…
We study a document retrieval problem in the new framework where $D$ text documents are organized in a {\em category tree} with a pre-defined number $h$ of categories. This situation occurs e.g. with taxomonic trees in biology or subject…
Given a dynamic set $K$ of $k$ strings of total length $n$ whose characters are drawn from an alphabet of size $\sigma$, a keyword dictionary is a data structure built on $K$ that provides locate, prefix search, and update operations on…
We study the fundamental question of how efficiently suffix array entries can be accessed when the array cannot be stored explicitly. The suffix array $SA_T[1..n]$ of a text $T$ of length $n$ encodes the lexicographic order of its suffixes…
In a variety of applications, we need to keep track of the development of a data set over time. For maintaining and querying this multi version data I/O-efficiently, external memory data structures are required. In this paper, we present a…
The dictionary matching problem is to locate occurrences of any pattern among a set of patterns in a given text. Massive data sets abound and at the same time, there are many settings in which working space is extremely limited. We…
We consider online algorithms for the $k$-server problem on trees. Chrobak and Larmore proposed a $k$-competitive algorithm for this problem that has the optimal competitive ratio. However, a naive implementation of their algorithm has…
The k-means clustering algorithm is a popular algorithm that partitions data into k clusters. There are many improvements to accelerate the standard algorithm. Most current research employs upper and lower bounds on point-to-cluster…
A suffix tree is able to efficiently locate a pattern in an indexed string, but not in general the most recent copy of the pattern in an online stream, which is desirable in some applications. We study the most general version of the…