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Discerning how a mutation affects the stability of a protein is central to the study of a wide range of diseases. Machine learning and statistical analysis techniques can inform how to allocate limited resources to the considerable time and…

Quantitative Methods · Quantitative Biology 2018-03-14 Richard Olney , Aaron Tuor , Filip Jagodzinski , Brian Hutchinson

The majority of traditional classification ru les minimizing the expected probability of error (0-1 loss) are inappropriate if the class probability distributions are ill-defined or impossible to estimate. We argue that in such cases class…

Machine Learning · Statistics 2018-08-14 Robert P. W. Duin , Elzbieta Pekalska

One of the central problems in the classification of individual test sequences (e.g. genetic analysis), is that of checking for the similarity of sample test sequences as compared with a set of much longer training sequences. This is done…

Information Theory · Computer Science 2014-06-24 Jacob Ziv

Over the past 30 years many researchers in the field of evolutionary computation have put a lot of effort to introduce various approaches for solving hard problems. Most of these problems have been inspired by major industries so that…

Neural and Evolutionary Computing · Computer Science 2016-06-23 Mohammad Reza Bonyadi , Zbigniew Michalewicz , Frank Neumann , Markus Wagner

The main motivation of this work was practical, to offer computationally and theoretical scalable ways to structuring large classes of computation. It started from attempts to optimize R code for machine learning/artificial intelligence…

Programming Languages · Computer Science 2019-08-13 Mircea Namolaru , Thierry Goubier

Open set recognition problems exist in many domains. For example in security, new malware classes emerge regularly; therefore malware classification systems need to identify instances from unknown classes in addition to discriminating…

Machine Learning · Computer Science 2018-02-14 Mehadi Hassen , Philip K. Chan

This paper presents a batch classifier that has been improved from the earlier version and fixed a mistake in the earlier paper. Two important changes have been made. Each category is represented by a classifier, where each classifier…

Machine Learning · Computer Science 2021-12-03 Kieran Greer

While large language models (LLMs) excel at factual recall, the real challenge lies in knowledge application. A gap persists between their ability to answer complex questions and their effectiveness in performing tasks that require that…

Computation and Language · Computer Science 2026-01-21 Siyang Wu , Honglin Bao , Nadav Kunievsky , James A. Evans

In this paper we provide a novel approach to the analysis of kinetic models for label switching, which are used for particle systems that can randomly switch between gradient flows in different energy landscapes. Besides problems in biology…

Analysis of PDEs · Mathematics 2022-12-09 Martin Burger , Alex Rossi

Network maps of patent classes have been widely used to analyze the coherence and diversification of technology or knowledge positions of inventors, firms, industries, regions, and so on. To create such networks, a measure is required to…

Digital Libraries · Computer Science 2019-02-20 Bowen Yan , Jianxi Luo

In this paper we investigate networks whose evolution is governed by the interaction of a random assembly process and an optimization process. In the first process, new nodes are added one at a time and form connections to randomly selected…

Disordered Systems and Neural Networks · Physics 2011-05-16 Markus Brede

Classification of datasets into two or more distinct classes is an important machine learning task. Many methods are able to classify binary classification tasks with a very high accuracy on test data, but cannot provide any easily…

Machine Learning · Computer Science 2020-08-26 Yashesh Dhebar , Sparsh Gupta , Kalyanmoy Deb

Changes in air transport networks over time may be induced by competition among carriers, changes in regulations on airline industry, and socioeconomic events such as terrorist attacks and epidemic outbreaks. Such network changes may…

Physics and Society · Physics 2021-03-17 Kashin Sugishita , Naoki Masuda

We study the effect of speciation, i.e. the introduction of new species through evolution into communities, in the setting of predator-prey systems. Predator-prey dynamics is classically well modeled by Lotka-Volterra equations, also when…

Populations and Evolution · Quantitative Biology 2025-03-20 Christian Hamster , Jorik Schaap , Peter van Heijster , Joshua Dijksman

In many real-world classification or recognition tasks, it is often difficult to collect training examples that exhaust all possible classes due to, for example, incomplete knowledge during training or ever changing regimes. Therefore,…

Machine Learning · Computer Science 2024-08-07 Guanchao Feng , Dhruv Desai , Stefano Pasquali , Dhagash Mehta

Multiple supervised learning scenarios are composed by a sequence of classification tasks. For instance, multi-task learning and continual learning aim to learn a sequence of tasks that is either fixed or grows over time. Existing…

Machine Learning · Statistics 2025-01-10 Verónica Álvarez , Santiago Mazuelas , Jose A. Lozano

Understanding the learning dynamics of neural networks is one of the key issues for the improvement of optimization algorithms as well as for the theoretical comprehension of why deep neural nets work so well today. In this paper, we…

Machine Learning · Statistics 2021-03-18 Zhenyu Liao , Romain Couillet

We introduce the concept of an abstract evolution system, which provides a convenient framework for studying generic mathematical structures and their properties. Roughly speaking, an evolution system is a category endowed with a selected…

Logic · Mathematics 2024-08-13 Wiesław Kubiś , Paulina Radecka

Regularization and Bayesian methods for system identification have been repopularized in the recent years, and proved to be competitive w.r.t. classical parametric approaches. In this paper we shall make an attempt to illustrate how the use…

Systems and Control · Computer Science 2015-11-06 A. Chiuso

We present a method for predicting the large-scale evolution of a tag system from its production rules. A tag system's evolution is first divided into stages called `epochs' in which the tag system evolves monotonously. The distribution of…

Formal Languages and Automata Theory · Computer Science 2018-02-06 Carlos Martin
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