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Functional Magnetic Resonance Imaging (fMRI) provides useful insights into the brain function both during task or rest. Representing fMRI data using correlation matrices is found to be a reliable method of analyzing the inherent…

Machine Learning · Computer Science 2025-01-29 Yicheng Leng , Syed Muhammad Anwar , Islem Rekik , Sen He , Eung-Joo Lee

Graph neural networks (GNNs) have received tremendous attention due to their power in learning effective representations for graphs. Most GNNs follow a message-passing scheme where the node representations are updated by aggregating and…

Machine Learning · Computer Science 2021-05-11 Wei Jin , Xiaorui Liu , Yao Ma , Tyler Derr , Charu Aggarwal , Jiliang Tang

Image datasets such as MNIST are a key benchmark for testing Graph Neural Network (GNN) architectures. The images are traditionally represented as a grid graph with each node representing a pixel and edges connecting neighboring pixels…

Image and Video Processing · Electrical Eng. & Systems 2025-09-08 Mayur S Gowda , John Shi , Augusto Santos , José M. F. Moura

We propose an algorithm to uncover the intrinsic low-rank component of a high-dimensional, graph-smooth and grossly-corrupted dataset, under the situations that the underlying graph is unknown. Based on a model with a low-rank component…

Computer Vision and Pattern Recognition · Computer Science 2018-03-07 Rui Liu , Hossein Nejati , Seyed Hamid Safavi , Ngai-Man Cheung

We present a tutorial on reduced-rank signal processing, design methods and algorithms for dimensionality reduction, and cover a number of important applications. A general framework based on linear algebra and linear estimation is employed…

Information Theory · Computer Science 2015-08-05 Rodrigo C. de Lamare

Convolutional neural networks (CNNs) are usually used as a backbone to design methods in biomedical image segmentation. However, the limitation of receptive field and large number of parameters limit the performance of these methods. In…

Image and Video Processing · Electrical Eng. & Systems 2022-09-27 Chong Wu , Zhenan Feng , Houwang Zhang , Hong Yan

More and more large data collections are gathered worldwide in various IT systems. Many of them possess the networked nature and need to be processed and analysed as graph structures. Due to their size they require very often usage of…

Distributed, Parallel, and Cluster Computing · Computer Science 2013-06-04 Tomasz Kajdanowicz , Przemyslaw Kazienko , Wojciech Indyk

Deep learning methods have recently made notable advances in the tasks of classification and representation learning. These tasks are important for brain imaging and neuroscience discovery, making the methods attractive for porting to a…

Neural and Evolutionary Computing · Computer Science 2014-02-20 Sergey M. Plis , Devon R. Hjelm , Ruslan Salakhutdinov , Vince D. Calhoun

Cognitive brain imaging is accumulating datasets about the neural substrate of many different mental processes. Yet, most studies are based on few subjects and have low statistical power. Analyzing data across studies could bring more…

Machine Learning · Statistics 2021-05-20 Arthur Mensch , Julien Mairal , Bertrand Thirion , Gaël Varoquaux

In applications such as social, energy, transportation, sensor, and neuronal networks, high-dimensional data naturally reside on the vertices of weighted graphs. The emerging field of signal processing on graphs merges algebraic and…

Discrete Mathematics · Computer Science 2015-06-12 David I Shuman , Sunil K. Narang , Pascal Frossard , Antonio Ortega , Pierre Vandergheynst

Finding the biomarkers associated with ASD is helpful for understanding the underlying roots of the disorder and can lead to earlier diagnosis and more targeted treatment. A promising approach to identify biomarkers is using Graph Neural…

Machine Learning · Computer Science 2019-07-15 Xiaoxiao Li , Nicha C. Dvornek , Yuan Zhou , Juntang Zhuang , Pamela Ventola , James S. Duncan

With the proliferation of Graph Neural Network (GNN) methods stemming from contrastive learning, unsupervised node representation learning for graph data is rapidly gaining traction across various fields, from biology to molecular dynamics,…

Machine Learning · Computer Science 2024-08-01 Jihee You , So Won Jeong , Claire Donnat

The construction of brain graphs from functional Magnetic Resonance Imaging (fMRI) data plays a crucial role in enabling graph machine learning for neuroimaging. However, current practices often rely on rigid pipelines that overlook…

Machine Learning · Computer Science 2025-08-19 Qinwen Ge , Roza G. Bayrak , Anwar Said , Catie Chang , Xenofon Koutsoukos , Tyler Derr

Mapping the connectome of the human brain using structural or functional connectivity has become one of the most pervasive paradigms for neuroimaging analysis. Recently, Graph Neural Networks (GNNs) motivated from geometric deep learning…

Neurons and Cognition · Quantitative Biology 2022-11-30 Hejie Cui , Wei Dai , Yanqiao Zhu , Xuan Kan , Antonio Aodong Chen Gu , Joshua Lukemire , Liang Zhan , Lifang He , Ying Guo , Carl Yang

Brain decoding is a field of computational neuroscience that uses measurable brain activity to infer mental states or internal representations of perceptual inputs. Therefore, we propose a novel approach to brain decoding that also relies…

Computer Vision and Pattern Recognition · Computer Science 2023-03-23 Matteo Ferrante , Tommaso Boccato , Nicola Toschi

Aggregating multi-subject functional magnetic resonance imaging (fMRI) data is indispensable for generating valid and general inferences from patterns distributed across human brains. The disparities in anatomical structures and functional…

Machine Learning · Computer Science 2019-11-20 Weida Li , Mingxia Liu , Fang Chen , Daoqiang Zhang

Graph signal processing (GSP) studies graph-structured data, where the central concept is the vector space of graph signals. To study a vector space, we have many useful tools up our sleeves. However, uncertainty is omnipresent in practice,…

Signal Processing · Electrical Eng. & Systems 2023-02-23 Feng Ji , Xingchao Jian , Wee Peng Tay

The underlying theme of this paper is to explore the various facets of power systems data through the lens of graph signal processing (GSP), laying down the foundations of the Grid-GSP framework. Grid-GSP provides an interpretation for the…

Signal Processing · Electrical Eng. & Systems 2021-06-09 Raksha Ramakrishna , Anna Scaglione

Dimensionality reduction (DR) is an important technique for data exploration and knowledge discovery. However, most of the main DR methods are either linear (e.g., PCA), do not provide an explicit mapping between the original data and its…

Neural and Evolutionary Computing · Computer Science 2022-03-15 Thomas Uriot , Marco Virgolin , Tanja Alderliesten , Peter Bosman

Signal processing over graphs has recently attracted significant attentions for dealing with structured data. Normal graphs, however, only model pairwise relationships between nodes and are not effective in representing and capturing some…

Signal Processing · Electrical Eng. & Systems 2020-06-05 Songyang Zhang , Zhi Ding , Shuguang Cui