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Accurate segmentation of 3-D cell nuclei in microscopy images is essential for the study of nuclear organization, gene expression, and cell morphodynamics. Current image segmentation methods are challenged by the complexity and variability…

Image and Video Processing · Electrical Eng. & Systems 2022-03-18 Sundaresh Ram , Jeffrey J. Rodriguez

Full 3D scanning can efficiently be obtained using structured light scanning combined with a rotation stage. In this setting it is, however, necessary to reposition the object and scan it in different poses in order to cover the entire…

Computer Vision and Pattern Recognition · Computer Science 2021-09-15 Dolores Messer , Jakob Wilm , Eythor R. Eiriksson , Vedrana A. Dahl , Anders B. Dahl

Measuring tree morphology for phenotyping is an essential but labor-intensive activity in horticulture. Researchers often rely on manual measurements which may not be accurate for example when measuring tree volume. Recent approaches on…

Robotics · Computer Science 2018-04-18 Wenbo Dong , Volkan Isler

Single-photon light detection and ranging (lidar) captures depth and intensity information of a 3D scene. Reconstructing a scene from observed photons is a challenging task due to spurious detections associated with background illumination…

Image and Video Processing · Electrical Eng. & Systems 2022-03-03 Julián Tachella , Michael P. Sheehan , Mike E. Davies

Small Unmanned Aerial Vehicles (UAVs) exhibit immense potential for navigating indoor and hard-to-reach areas, yet their significant constraints in payload and autonomy have largely prevented their use for complex tasks like high-quality…

Image-based 3D reconstruction or 3D photogrammetry of small-scale objects including insects and biological specimens is challenging due to the use of high magnification lens with inherent limited depth of field, and the object's fine…

Computer Vision and Pattern Recognition · Computer Science 2019-12-09 Hengjia Li , Chuong Nguyen

Highly multiplexed microscopy enables rich spatial characterization of tissues at single-cell resolution, yet most analyses rely on two-dimensional sections despite inherently three-dimensional tissue organization. Acquiring dense…

Computer Vision and Pattern Recognition · Computer Science 2026-04-10 Ido Harlev , Tamar Oukhanov , Raz Ben-Uri , Leeat Keren , Shai Bagon

High-resolution cameras have become very helpful for plant phenotyping by providing a mechanism for tasks such as target versus background discrimination, and the measurement and analysis of fine-above-ground plant attributes. However, the…

Computer Vision and Pattern Recognition · Computer Science 2020-05-06 Jose F. Ruiz-Munoz , Jyothier K. Nimmagadda , Tyler G. Dowd , James E. Baciak , Alina Zare

We present a near real-time solution for 3D reconstruction from aerial images captured by consumer UAVs. Our core idea is to simplify the multi-view stereo problem into a series of two-view stereo matching problems. Our method applies to…

Computational Geometry · Computer Science 2019-02-27 Qiaosong Wang

Accurate quantification of forest coverage and combustible biomass (fuel load) is critical for wildfire risk assessment and ecosystem management. However, traditional methods relying on airborne LiDAR or field surveys are cost-prohibitive…

Computer Vision and Pattern Recognition · Computer Science 2026-05-12 Quanyun Wu , Kyle Gao , Wentao Sun , Zhengsen Xu , Hudson Sun , Linlin Xu , Yuhao Chen , David A. Clausi , Jonathan Li

Imaging 3D nano-structures at very high resolution is crucial in a variety of scientific fields. However, due to fundamental limitations of light propagation we can only measure the object indirectly via 2D intensity measurements of the 3D…

Image and Video Processing · Electrical Eng. & Systems 2020-02-28 Zalan Fabian , Justin Haldar , Richard Leahy , Mahdi Soltanolkotabi

Strawberries are among the most economically significant fruits in the United States, generating over $2 billion in annual farm-gate sales and accounting for approximately 13% of the total fruit production value. Plant phenotyping plays a…

Computer Vision and Pattern Recognition · Computer Science 2025-11-05 Jiajia Li , Keyi Zhu , Qianwen Zhang , Dong Chen , Qi Sun , Zhaojian Li

We combine confocal imaging, microfluidics and image analysis to record 3D-images of cells in flow. This enables us to recover the full 3D representation of several hundred living cells per minute. Whereas 3D confocal imaging has thus far…

Fluid Dynamics · Physics 2017-09-19 S. Quint , A. F. Christ , A. Guckenberger , S. Himbert , L. Kaestner , S. Gekle , C. Wagner

Recent years have witnessed the increasing popularity of learning based methods to enhance the color and tone of photos. However, many existing photo enhancement methods either deliver unsatisfactory results or consume too much…

Image and Video Processing · Electrical Eng. & Systems 2020-10-01 Hui Zeng , Jianrui Cai , Lida Li , Zisheng Cao , Lei Zhang

We present an efficient and automatic approach for accurate reconstruction of instances of big 3D objects from multiple, unorganized and unstructured point clouds, in presence of dynamic clutter and occlusions. In contrast to conventional…

Computer Vision and Pattern Recognition · Computer Science 2017-08-18 Tolga Birdal , Slobodan Ilic

We present a novel approach for benchmarking and validating quantitative phase tomography (QPT) systems using three-dimensional microphantoms. These microphantoms, crafted from biological and imaging data, replicate the optical and…

The collection of ecological data in the field is essential to diagnose, monitor and manage ecosystems in a sustainable way. Since acquisition of this information through traditional methods are generally time-consuming, due to the…

Computer Vision and Pattern Recognition · Computer Science 2024-01-12 Ion Ciobotari , Adriana Príncipe , Maria Alexandra Oliveira , João Nuno Silva

Depth acquisition, based on active illumination, is essential for autonomous and robotic navigation. LiDARs (Light Detection And Ranging) with mechanical, fixed, sampling templates are commonly used in today's autonomous vehicles. An…

Computer Vision and Pattern Recognition · Computer Science 2019-08-06 Adam Wolff , Shachar Praisler , Ilya Tcenov , Guy Gilboa

Spinning LiDAR data are prevalent for 3D vision tasks. Since LiDAR data is presented in the form of point clouds, expensive 3D operations are usually required. This paper revisits spinning LiDAR scan formation and presents a cylindrical…

Computer Vision and Pattern Recognition · Computer Science 2022-03-30 Wei Dong , Kwonyoung Ryu , Michael Kaess , Jaesik Park

In this paper, we present a method for creating high-quality 3D models of sorghum panicles for phenotyping in breeding experiments. This is achieved with a novel reconstruction approach that uses seeds as semantic landmarks in both 2D and…

Robotics · Computer Science 2025-03-11 Harry Freeman , Eric Schneider , Chung Hee Kim , Moonyoung Lee , George Kantor
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