Related papers: PubTree: A Hierarchical Search Tool for the MEDLIN…
Biomedical research yields a wealth of information, much of which is only accessible through the literature. Consequently, literature search is an essential tool for building on prior knowledge in clinical and biomedical research. Although…
Currently, most people use PubMed to search the MEDLINE database, an important bibliographical information source for life science and biomedical information. However, PubMed has some drawbacks that make it difficult to find relevant…
The amount of scientific papers published every day is daunting and constantly increasing. Keeping up with literature represents a challenge. If one wants to start exploring new topics it is hard to have a big picture without reading lots…
Now a day's, search engines are been most widely used for extracting information's from various resources throughout the world. Where, majority of searches lies in the field of biomedical for retrieving related documents from various…
The number of biomedical research articles published has doubled in the past 20 years. Search engine based systems naturally center around searching, but researchers may not have a clear goal in mind, or the goal may be expressed in a query…
Digital libraries maintain extensive collections of knowledge and need to provide effective access paths for their users. For instance, PubPharm, the specialized information service for Pharmacy in Germany, provides and develops access…
As researchers delve more deeply into their work, paper search requirements may become more flexible, sometimes involving specific details such as module configuration rather than being limited to coarse-grained topics. However, previous…
We have developed an application that will take a "MEDLINE" output from the PubMed database and allows the user to cluster all non-trivial words of the abstracts of the PubMed output. The number of clusters to use can be selected by the…
A new clinical literature search engine, called CupQ, is presented. It aims to help clinicians stay updated with medical knowledge. Although PubMed is currently one of the most widely used digital libraries for biomedical information, it…
Citations allow quickly identifying related research. If multiple publications are selected as seeds, specific suggestions for related literature can be made based on the number of incoming and outgoing citation links to this selection.…
PubTator 3.0 (https://www.ncbi.nlm.nih.gov/research/pubtator3/) is a biomedical literature resource using state-of-the-art AI techniques to offer semantic and relation searches for key concepts like proteins, genetic variants, diseases, and…
This paper presents a preliminary experimentation study using the CLEF 2017 eHealth Task 2 collection for evaluating the effectiveness of different indexing methodologies of documents and query parsing techniques. Furthermore, it is an…
Tables are common and important in scientific documents, yet most text-based document search systems do not capture structures and semantics specific to tables. How to bridge different types of mismatch between keywords queries and…
Literature search is arguably one of the most important phases of the academic and non-academic research. The increase in the number of published papers each year makes manual search inefficient and furthermore insufficient. Hence,…
Academic researchers often need to face with a large collection of research papers in the literature. This problem may be even worse for postgraduate students who are new to a field and may not know where to start. To address this problem,…
PubMed is a freely accessible system for searching the biomedical literature, with approximately 2.5 million users worldwide on an average workday. We have recently developed PubMed Labs (www.pubmed.gov/labs), an experimental platform for…
Here we study the semantic search and retrieval problem in biomedical digital libraries. First, we introduce MedGraph, a knowledge graph embedding-based method that provides semantic relevance retrieval and ranking for the biomedical…
We describe a PubMed scale retrieval framework that separates semantic interpretation from metric geometry. A large language model expands a natural language query into concise biomedical phrases; retrieval then operates in a fixed, mean…
Multiple perspectives on the nonlinear processes of medical innovations can be distinguished and combined using the Medical Subject Headings (MeSH) of the Medline database. Focusing on three main branches-"diseases," "drugs and chemicals,"…
Manually curated biomedical repositories -- spanning bioactivity, genomics, and chemistry -- are expensive to maintain, lag behind primary literature, and discard experimental context, obscuring nuances needed to assess data correctness and…