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We show that Closest Substring, one of the most important problems in the field of biological sequence analysis, is W[1]-hard when parameterized by the number k of input strings (and remains so, even over a binary alphabet). This problem is…

Computational Complexity · Computer Science 2007-05-23 Michael R. Fellows , Jens Gramm , Rolf Niedermeier

In this paper we prove that for any infinite word W whose set of factors is closed under reversal, the following conditions are equivalent: (I) all complete returns to palindromes are palindromes; (II) P(n) + P(n+1) = C(n+1) - C(n) + 2 for…

Combinatorics · Mathematics 2010-04-08 Michelangelo Bucci , Alessandro De Luca , Amy Glen , Luca Q. Zamboni

The maximum size of a binary code is studied as a function of its length N, minimum distance D, and minimum codeword weight W. This function B(N,D,W) is first characterized in terms of its exponential growth rate in the limit as N tends to…

Information Theory · Computer Science 2010-09-21 Christine Bachoc , Venkat Chandar , Gerard Cohen , Patrick Sole , Aslan Tchamkerten

We discuss a number of techniques for determining the Minkowski dimension of bounded subsets of some Euclidean space of any dimension, including: the box-counting dimension and equivalent definitions based on various box-counting functions;…

Mathematical Physics · Physics 2013-02-04 Michel L. Lapidus , John A. Rock , Darko Žubrinić

Subshifts are sets of colorings of $\mathbb{Z}^d$ defined by families of forbidden patterns. In a given subshift, the extender set of a finite pattern is the set of all its admissible completions. Since soficity of $\mathbb{Z}$ subshifts is…

Discrete Mathematics · Computer Science 2025-10-03 Antonin Callard , Léo Paviet Salomon , Pascal Vanier

The \emph{index set} of a computable structure $\mathcal{A}$ is the set of indices for computable copies of $\mathcal{A}$. We determine the complexity of the index sets of various mathematically interesting structures, including arbitrary…

Logic · Mathematics 2008-03-25 Wesley Calvert , Valentina S. Harizanov , Julia F. Knight , Sara Miller

In this note we provide a (decidable) graph-structural characterisation of the infiniteness of $L(w_1, ..., w_k)$, where $L(w_1, ..., w_k) = \{w \in A^* | |w|_{w_1} = \cdots = |w|_{w_k}\}$ is the set of all words that contain the same…

Formal Languages and Automata Theory · Computer Science 2019-10-29 Ryoma Sin'ya

Infinite words, also known as streams, hold significant interest in computer science and mathematics, raising the natural question of how their complexity should be measured. We introduce cellular automaton reducibility as a measure of…

Formal Languages and Automata Theory · Computer Science 2026-01-30 Markel Zubia , Herman Geuvers

We introduce a method to estimate the complexity function of symbolic dynamical systems from a finite sequence of symbols. We test such complexity estimator on several symbolic dynamical systems whose complexity functions are known exactly.…

Populations and Evolution · Quantitative Biology 2017-01-19 R. Salgado-Garcia , E. Ugalde

The Fibonacci word $W$ on an infinite alphabet was introduced in [Zhang et al., Electronic J. Combinatorics 2017 24(2), 2-52] as a fixed point of the morphism $2i\rightarrow (2i)(2i+1)$, $(2i+1) \rightarrow (2i+2)$, $i\geq 0$. Here, for any…

Combinatorics · Mathematics 2019-12-02 Narges Ghareghani , Pouyeh Sharifani , Morteza Mohammad-Noori

We study the impact of certain identities and probabilistic identities on the structure of finite groups. More specifically, let $w$ be a nontrivial word in $d$ distinct variables and let $G$ be a finite group for which the word map…

Group Theory · Mathematics 2019-04-05 Alexander Bors , Aner Shalev

The aim of this note is to survey the factorizations of the Fibonacci infinite word that make use of the Fibonacci words and other related words, and to show that all these factorizations can be easily derived in sequence starting from…

Formal Languages and Automata Theory · Computer Science 2015-08-28 Gabriele Fici

We consider the number of occurrences of subwords (non-consecutive sub-sequences) in a given word. We first define the notion of subword entropy of a given word that measures the maximal number of occurrences among all possible subwords. We…

Combinatorics · Mathematics 2025-10-06 Wenjie Fang

The factor complexity of the infinite word $\ubeta$ canonically associated to a non-simple Parry number $\beta$ is studied. Our approach is based on the notion of special factors introduced by Berstel and Cassaigne. At first, we give a…

Combinatorics · Mathematics 2017-05-31 Karel Klouda , Edita Pelantová

A finite set S of words over the alphabet A is called non-complete if Fact(S*) is different from A*. A word w in A* - Fact(S*) is said to be uncompletable. We present a series of non-complete sets S_k whose minimal uncompletable words have…

Formal Languages and Automata Theory · Computer Science 2011-04-05 Vladimir V. Gusev , Elena V. Pribavkina

A closed word (a.k.a. periodic-like word or complete first return) is a word whose longest border does not have internal occurrences, or, equivalently, whose longest repeated prefix is not right special. We investigate the structure of…

Formal Languages and Automata Theory · Computer Science 2014-12-02 Golnaz Badkobeh , Gabriele Fici , Zsuzsanna Lipták

This paper is an extended abstract of the dissertation presented by the author for the doctoral degree in physics and mathematics (in Russia). The main characteristic studied in the dissertation is combinatorial complexity, which is a…

Formal Languages and Automata Theory · Computer Science 2010-10-27 Arseny M. Shur

We fully classify automatic sequences $a$ over a finite alphabet $\Omega$ with the property that each word over $\Omega$ appears is $a$ along an arithmetic progression. Using the terminology introduced by Avgustinovich, Fon-Der-Flaass and…

Number Theory · Mathematics 2024-02-08 Jakub Konieczny , Clemens Müllner

We introduce the space function $s(n)$ of a finitely presented semigroup $S =<A\mid R>.$ To define $s(n)$ we consider pairs of words $w,w'$ over $A$ of length at most $n$ equal in $S$ and use relations from $R$ for the transformations…

Group Theory · Mathematics 2011-11-08 Alexander Olshanskii

We study fractal properties of unbounded domains with infinite Lebesgue measure via their complex fractal dimensions. These complex dimensions are defined as poles of a suitable defined Lapidus fractal zeta function at infinity and are a…

Complex Variables · Mathematics 2025-08-05 Goran Radunović