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This paper presents a new, parallel implementation of clustering and demonstrates its utility in greatly speeding up the process of identifying homologous proteins. Clustering is a technique to reduce the number of comparison needed to find…

Distributed, Parallel, and Cluster Computing · Computer Science 2019-08-29 Stuart Byma , Akash Dhasade , Adrian Altenhoff , Christophe Dessimoz , James R. Larus

Hierarchical clustering based on pairwise similarities is a common tool used in a broad range of scientific applications. However, in many problems it may be expensive to obtain or compute similarities between the items to be clustered.…

Information Theory · Computer Science 2015-03-19 Brian Eriksson , Gautam Dasarathy , Aarti Singh , Robert Nowak

The goal of clustering is to group similar objects into meaningful partitions. This process is well understood when an explicit similarity measure between the objects is given. However, far less is known when this information is not readily…

Machine Learning · Computer Science 2020-10-12 Michaël Perrot , Pascal Mattia Esser , Debarghya Ghoshdastidar

For companies developing products or algorithms, it is important to understand the potential effects not only globally, but also on sub-populations of users. In particular, it is important to detect if there are certain groups of users that…

Machine Learning · Computer Science 2020-10-28 Amir Sepehri , Cyrus DiCiccio

Correlation clustering is a technique for aggregating data based on qualitative information about which pairs of objects are labeled 'similar' or 'dissimilar.' Because the optimization problem is NP-hard, much of the previous literature…

Machine Learning · Computer Science 2017-03-20 Nate Veldt , Anthony Wirth , David F. Gleich

Role discovery is the task of dividing the set of nodes on a graph into classes of structurally similar roles. Modern strategies for role discovery typically rely on graph embedding techniques, which are capable of recognising complex local…

Social and Information Networks · Computer Science 2022-06-08 Eoghan Cunningham , Derek Greene

Network representations have been effectively employed to analyze complex systems across various areas and applications, leading to the development of network science as a core tool to study systems with multiple components and complex…

Neurons and Cognition · Quantitative Biology 2023-07-25 ItaloIvo Lima Dias Pinto , Javier Omar Garcia , Kanika Bansal

Network models provide a powerful and flexible framework for analyzing a wide range of structured data sources. In many situations of interest, however, multiple networks can be constructed to capture different aspects of an underlying…

Social and Information Networks · Computer Science 2021-11-03 Madeline Navarro , Genevera I. Allen , Michael Weylandt

Proximity measures on graphs have a variety of applications in network analysis, including community detection. Previously they have been mainly studied in the context of networks without attributes. If node attributes are taken into…

Social and Information Networks · Computer Science 2022-12-06 Rinat Aynulin , Pavel Chebotarev

We develop a new density-based clustering algorithm named CRAD which is based on a new neighbor searching function with a robust data depth as the dissimilarity measure. Our experiments prove that the new CRAD is highly competitive at…

Computation · Statistics 2019-04-09 Xin Huang , Yulia R. Gel

Clustering is a fundamental problem in network analysis that finds closely connected groups of nodes and separates them from other nodes in the graph, while link prediction is to predict whether two nodes in a network are likely to have a…

Social and Information Networks · Computer Science 2022-11-29 Shanfan Zhang , Wenjiao Zhang , Zhan Bu

The roles of different nodes within a network are often understood through centrality analysis, which aims to quantify the capacity of a node to influence, or be influenced by, other nodes via its connection topology. Many different…

Social and Information Networks · Computer Science 2020-07-01 Stuart Oldham , Ben Fulcher , Linden Parkes , Aurina Arnatkeviciute , Chao Suo , Alex Fornito

Low-rank approximation of a matrix by means of random sampling has been consistently efficient in its empirical studies by many scientists who applied it with various sparse and structured multipliers, but adequate formal support for this…

Numerical Analysis · Mathematics 2016-06-07 Victor Y. Pan , Liang Zhao

Cycles are ubiquitous in various networks such as social, biological, and technological systems, where they play a significant functional and dynamical role. This paper proposes a node similarity measure based on minimal simple cycles,…

Physics and Society · Physics 2026-01-30 Bo Yang

The structure of many complex networks includes edge directionality and weights on top of their topology. Network analysis that can seamlessly consider combination of these properties are desirable. In this paper, we study two important…

Social and Information Networks · Computer Science 2021-11-24 Frederique Oggier , Silivanxay Phetsouvanh , Anwitaman Datta

Tools to analyze the latent space of deep neural networks provide a step towards better understanding them. In this work, we motivate sparse subspace clustering (SSC) with an aim to learn affinity graphs from the latent structure of a given…

Machine Learning · Computer Science 2021-07-06 Uday Singh Saini , Pravallika Devineni , Evangelos E. Papalexakis

Dynamic model reduction in power systems is necessary for improving computational efficiency. Traditional model reduction using linearized models or online analysis is not adequate to capture dynamic behaviors of the power system,…

We study the problem of applying spectral clustering to cluster multi-scale data, which is data whose clusters are of various sizes and densities. Traditional spectral clustering techniques discover clusters by processing a similarity…

Machine Learning · Computer Science 2020-06-09 Xiang Li , Ben Kao , Caihua Shan , Dawei Yin , Martin Ester

We address the problem of learning linear system models from observing multiple trajectories from different system dynamics. This framework encompasses a collaborative scenario where several systems seeking to estimate their dynamics are…

Optimization and Control · Mathematics 2023-09-12 Leonardo F. Toso , Han Wang , James Anderson

Hierarchical clustering is a stronger extension of one of today's most influential unsupervised learning methods: clustering. The goal of this method is to create a hierarchy of clusters, thus constructing cluster evolutionary history and…

Data Structures and Algorithms · Computer Science 2021-01-14 MohammadTaghi Hajiaghayi , Marina Knittel
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