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Embeddings of knowledge graphs have received significant attention due to their excellent performance for tasks like link prediction and entity resolution. In this short paper, we are providing a comparison of two state-of-the-art knowledge…

Machine Learning · Computer Science 2017-07-25 Théo Trouillon , Maximilian Nickel

Learning embeddings of entities and relations is an efficient and versatile method to perform machine learning on relational data such as knowledge graphs. In this work, we propose holographic embeddings (HolE) to learn compositional vector…

Artificial Intelligence · Computer Science 2015-12-08 Maximilian Nickel , Lorenzo Rosasco , Tomaso Poggio

In statistical relational learning, the link prediction problem is key to automatically understand the structure of large knowledge bases. As in previous studies, we propose to solve this problem through latent factorization. However, here…

Artificial Intelligence · Computer Science 2016-06-22 Théo Trouillon , Johannes Welbl , Sebastian Riedel , Éric Gaussier , Guillaume Bouchard

Many link prediction algorithms require the computation of a similarity metric on each vertex pair, which is quadratic in the number of vertices and infeasible for large networks. We develop a class of link prediction algorithms based on a…

Social and Information Networks · Computer Science 2017-04-10 Benjamin Pachev , Benjamin Webb

In statistical relational learning, knowledge graph completion deals with automatically understanding the structure of large knowledge graphs---labeled directed graphs---and predicting missing relationships---labeled edges. State-of-the-art…

Artificial Intelligence · Computer Science 2017-11-28 Théo Trouillon , Christopher R. Dance , Johannes Welbl , Sebastian Riedel , Éric Gaussier , Guillaume Bouchard

Heterogeneous graphs (HGs) also known as heterogeneous information networks have become ubiquitous in real-world scenarios; therefore, HG embedding, which aims to learn representations in a lower-dimension space while preserving the…

Social and Information Networks · Computer Science 2020-12-02 Xiao Wang , Deyu Bo , Chuan Shi , Shaohua Fan , Yanfang Ye , Philip S. Yu

A network embedding is a representation of a large graph in a low-dimensional space, where vertices are modeled as vectors. The objective of a good embedding is to preserve the proximity between vertices in the original graph. This way,…

Artificial Intelligence · Computer Science 2017-01-20 Zhipeng Huang , Nikos Mamoulis

Performing link prediction using knowledge graph embedding models has become a popular approach for knowledge graph completion. Such models employ a transformation function that maps nodes via edges into a vector space in order to measure…

Artificial Intelligence · Computer Science 2021-03-16 Mojtaba Nayyeri , Sahar Vahdati , Can Aykul , Jens Lehmann

Link and sign prediction in complex networks bring great help to decision-making and recommender systems, such as in predicting potential relationships or relative status levels. Many previous studies focused on designing the special…

Physics and Society · Physics 2021-08-04 Chuang Liu , Shimin Yu , Ying Huang , Zi-Ke Zhang

Over the past years, embedding learning on networks has shown tremendous results in link prediction tasks for complex systems, with a wide range of real-life applications. Learning a representation for each node in a knowledge graph allows…

Machine Learning · Computer Science 2026-02-03 Orell Trautmann , Olaf Wolkenhauer , Clémence Réda

The complete characterization of enzymatic activities between molecules remains incomplete, hindering biological engineering and limiting biological discovery. We develop in this work a technique, Enzymatic Link Prediction (ELP), for…

Molecular Networks · Quantitative Biology 2020-02-11 Julie Jiang , Li-Ping Liu , Soha Hassoun

We propose the n-clique network as a powerful tool for understanding global structures of combined highly-interconnected subgraphs, and provide theoretical predictions for statistical properties of the n-clique networks embedded in a…

Physics and Society · Physics 2009-11-13 Kazuhiro Takemoto , Chikoo Oosawa , Tatsuya Akutsu

Predicting missing links between entities in a knowledge graph is a fundamental task to deal with the incompleteness of data on the Web. Knowledge graph embeddings map nodes into a vector space to predict new links, scoring them according…

Artificial Intelligence · Computer Science 2023-02-14 Cosimo Gregucci , Mojtaba Nayyeri , Daniel Hernández , Steffen Staab

Graph embedding methods aim at finding useful graph representations by mapping nodes to a low-dimensional vector space. It is a task with important downstream applications, such as link prediction, graph reconstruction, data visualization,…

Machine Learning · Computer Science 2022-09-13 Said Kerrache , Hafida Benhidour

Heterogeneous graphs are ubiquitous in real-world applications because they can represent various relationships between different types of entities. Therefore, learning embeddings in such graphs is a critical problem in graph machine…

Machine Learning · Computer Science 2024-04-02 Yue Zhang , Yuntian He , Saket Gurukar , Srinivasan Parthasarathy

Network embedding techniques aim at representing structural properties of graphs in geometric space. Those representations are considered useful in downstream tasks such as link prediction and clustering. However, the number of graph…

Physics and Society · Physics 2021-11-03 Yi-Jiao Zhang , Kai-Cheng Yang , Filippo Radicchi

Link prediction infers potential links from observed networks, and is one of the essential problems in network analyses. In contrast to traditional graph representation modeling which only predicts two-way pairwise relations, we propose a…

Social and Information Networks · Computer Science 2021-11-10 Yubai Yuan , Annie Qu

Recently, graph neural networks have been widely used for network embedding because of their prominent performance in pairwise relationship learning. In the real world, a more natural and common situation is the coexistence of pairwise…

Social and Information Networks · Computer Science 2021-01-19 Xiangguo Sun , Hongzhi Yin , Bo Liu , Hongxu Chen , Jiuxin Cao , Yingxia Shao , Nguyen Quoc Viet Hung

Link prediction, as a frontier task in complex network topology analysis, aims to infer the existence of latent links between node pairs based on observed nodes and structural information. We propose an ensemble link prediction model that…

Physics and Society · Physics 2025-12-09 Zi-Xuan Jin , Jun-Fan Yi , Ke-Ke Shang

We propose a novel and efficient method for link prediction in bipartite networks, using \textit{formal concept analysis} (FCA) and the Transformer encoder. Link prediction in bipartite networks finds practical applications in various…

Machine Learning · Computer Science 2025-03-21 Hongyuan Yang , Siqi Peng , Akihiro Yamamoto
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