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In this work we propose a multi-valued extension of logic programs under the stable models semantics where each true atom in a model is associated with a set of justifications. These justifications are expressed in terms of causal graphs…

Artificial Intelligence · Computer Science 2014-09-26 Pedro Cabalar , Jorge Fandinno , Michael Fink

In this paper, we propose the Neural Knowledge DNA, a framework that tailors the ideas underlying the success of neural networks to the scope of knowledge representation. Knowledge representation is a fundamental field that dedicate to…

Artificial Intelligence · Computer Science 2016-03-01 Haoxi Zhang , Cesar Sanin , Edward Szczerbicki

The phase diagram of a water solution of DNA and oppositely charged spherical macroions is studied. DNA winds around spheres to form beads-on-a-string complexes resembling the chromatin 10 nm fiber. At small enough concentration of spheres…

Soft Condensed Matter · Physics 2009-11-07 Toan T. Nguyen , Boris I. Shklovskii

Linear logic and the linear {\lambda}-calculus have a long standing tradition in the study of natural language form and meaning. Among the proof calculi of linear logic, proof nets are of particular interest, offering an attractive…

Computation and Language · Computer Science 2021-01-19 Konstantinos Kogkalidis , Michael Moortgat , Richard Moot

Graph-based interactive theorem provers offer a visual representation of proofs, explicitly representing the dependencies and inferences between each of the proof steps in a graph or hypergraph format. The number and complexity of these…

Logic in Computer Science · Computer Science 2023-11-20 James T. Oswald , Brandon Rozek

The idea of computing with DNA was given by Tom Head in 1987, however in 1994 in a seminal paper, the actual successful experiment for DNA computing was performed by Adleman. The heart of the DNA computing is the DNA hybridization, however,…

Information Theory · Computer Science 2016-07-04 Dixita Limbachiya , Bansari Rao , Manish K. Gupta

We consider the task of automated theorem proving, a key AI task. Deep learning has shown promise for training theorem provers, but there are limited human-written theorems and proofs available for supervised learning. To address this…

Logic in Computer Science · Computer Science 2020-11-02 Mingzhe Wang , Jia Deng

Theorem proving is a fundamental aspect of mathematics, spanning from informal reasoning in natural language to rigorous derivations in formal systems. In recent years, the advancement of deep learning, especially the emergence of large…

Artificial Intelligence · Computer Science 2024-08-23 Zhaoyu Li , Jialiang Sun , Logan Murphy , Qidong Su , Zenan Li , Xian Zhang , Kaiyu Yang , Xujie Si

Evolution consists of distinct stages: cosmological, biological, linguistic. Since biology verges on natural sciences and linguistics, we expect that it shares structures and features from both forms of knowledge. Indeed, in DNA we…

Other Quantitative Biology · Quantitative Biology 2019-10-01 Argyris Nicolaidis , Fotis Psomopoulos

Every existing knowledge system separates storage from computation. We show this separation is unnecessary and eliminate it. In a standard triple is_a(Apple, Company), domain context lives in the query or the programmer's mind. In a CDC…

Artificial Intelligence · Computer Science 2026-04-14 Chao Li , Yuru Wang

In Machine-Assisted Theorem Proving, a theorem proving agent searches for a sequence of expressions and tactics that can prove a conjecture in a proof assistant. In this work, we introduce several novel concepts and capabilities to address…

Logic in Computer Science · Computer Science 2026-03-03 Leni Aniva , Iori Oikawa , David Dill , Clark Barrett

Convincing someone of the truth value of a premise requires understanding and articulating the core logical structure of the argument which proves or disproves the premise. Understanding the logical structure of an argument refers to…

Computation and Language · Computer Science 2025-08-21 Krunal Shah , Dan Roth

This paper presents the first use of graph neural networks (GNNs) for higher-order proof search and demonstrates that GNNs can improve upon state-of-the-art results in this domain. Interactive, higher-order theorem provers allow for the…

Machine Learning · Computer Science 2019-09-16 Aditya Paliwal , Sarah Loos , Markus Rabe , Kshitij Bansal , Christian Szegedy

The neural network has become an integral part of modern software systems. However, they still suffer from various problems, in particular, vulnerability to adversarial attacks. In this work, we present a novel program reasoning framework…

Artificial Intelligence · Computer Science 2023-03-27 Zi Wang , Somesh Jha , Krishnamurthy , Dvijotham

Neural networks (NNs) are pervasive across various domains but often lack interpretability. To address the growing need for explanations, logic-based approaches have been proposed to explain predictions made by NNs, offering correctness…

Logic in Computer Science · Computer Science 2026-02-26 Luiz Fernando Paulino Queiroz , Carlos Henrique Leitão Cavalcante , Thiago Alves Rocha

DNA strand displacement systems have proven themselves to be fertile substrates for the design of programmable molecular machinery and circuitry. Domain-level reaction enumerators provide the foundations for molecular programming languages…

Computational Engineering, Finance, and Science · Computer Science 2020-06-05 Casey Grun , Karthik Sarma , Brian Wolfe , Seung Woo Shin , Erik Winfree

The DNA cryptography is a new and very promising direction in cryptography research. DNA can be used in cryptography for storing and transmitting the information, as well as for computation. Although in its primitive stage, DNA cryptography…

Cryptography and Security · Computer Science 2012-03-07 Kang Ning

In modern age, the increasing complexity of computation and communication technology is leading us towards the necessity of new paradigm. As a result, unconventional approach like DNA coding theory is gaining considerable attention. The…

Information Theory · Computer Science 2023-08-07 Mandrita Mondal , Kumar S. Ray

Ontological commitment, i.e., used concepts, relations, and assumptions, are a corner stone of qualitative reasoning (QR) models. The state-of-the-art for processing raw inputs, though, are deep neural networks (DNNs), nowadays often based…

Computer Vision and Pattern Recognition · Computer Science 2024-09-26 Mert Keser , Gesina Schwalbe , Niki Amini-Naieni , Matthias Rottmann , Alois Knoll

This paper presents sandra, a neuro-symbolic reasoner combining vectorial representations with deductive reasoning. Sandra builds a vector space constrained by an ontology and performs reasoning over it. The geometric nature of the reasoner…

Artificial Intelligence · Computer Science 2024-03-26 Nicolas Lazzari , Stefano De Giorgis , Aldo Gangemi , Valentina Presutti