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Graphs are ubiquitous in encoding relational information of real-world objects in many domains. Graph generation, whose purpose is to generate new graphs from a distribution similar to the observed graphs, has received increasing attention…

Machine Learning · Computer Science 2022-12-08 Yanqiao Zhu , Yuanqi Du , Yinkai Wang , Yichen Xu , Jieyu Zhang , Qiang Liu , Shu Wu

We introduce a categorical formalism for rewriting surface-embedded graphs. Such graphs can represent string diagrams in a non-symmetric setting where we guarantee that the wires do not intersect each other. The main technical novelty is a…

Logic in Computer Science · Computer Science 2023-08-01 Malin Altenmüller , Ross Duncan

For a given spatial graph $\mathcal{G} \subset \mathbb{R}^3$, we would like to find a closed orientable surface $\mathcal{S}$ embedded in $\mathbb{R}^3$ in which $\mathcal{G}$ is cellular embedded. However, for general $\mathcal{G}$ this is…

Geometric Topology · Mathematics 2025-10-21 Senja Barthel , Fabio Buccoliero

This is a brief introduction to the basic concepts of topology. It includes the basic constructions, discusses separation properties, metric and pseudometric spaces, and gives some applications arising from the use of topology in computing.

Logic · Mathematics 2015-03-04 E. -E. Doberkat

Algorithmicists are well-aware that fast dynamic programming algorithms are very often the correct choice when computing on compositional (or even recursive) graphs. Here we initiate the study of how to generalize this folklore intuition to…

Computational Complexity · Computer Science 2023-10-05 Ernst Althaus , Benjamin Merlin Bumpus , James Fairbanks , Daniel Rosiak

The C-Planarity problem asks for a drawing of a $\textit{clustered graph}$, i.e., a graph whose vertices belong to properly nested clusters, in which each cluster is represented by a simple closed region with no edge-edge crossings, no…

Data Structures and Algorithms · Computer Science 2018-03-16 Giordano Da Lozzo , David Eppstein , Michael T. Goodrich , Siddharth Gupta

Graphs are important data representations for describing objects and their relationships, which appear in a wide diversity of real-world scenarios. As one of a critical problem in this area, graph generation considers learning the…

Machine Learning · Computer Science 2022-10-06 Xiaojie Guo , Liang Zhao

Topological correctness plays a critical role in many image segmentation tasks, yet most networks are trained using pixel-wise loss functions, such as Dice, neglecting topological accuracy. Existing topology-aware methods often lack robust…

Computer Vision and Pattern Recognition · Computer Science 2025-04-21 Laurin Lux , Alexander H. Berger , Alexander Weers , Nico Stucki , Daniel Rueckert , Ulrich Bauer , Johannes C. Paetzold

Topological landscape is introduced for networks with functions defined on the nodes. By extending the notion of gradient flows to the network setting, critical nodes of different indices are defined. This leads to a concise and…

Methodology · Statistics 2012-05-01 E. Weinan , Jianfeng Lu , Yuan Yao

Persistent homology is a mathematical tool used for studying the shape of data by extracting its topological features. It has gained popularity in network science due to its applicability in various network mining problems, including…

Algebraic Topology · Mathematics 2023-06-21 Mehmet Emin Aktas , Thu Nguyen , Rakin Riza , Muhammad Ifte Islam , Esra Akbas

Constantly growing demands of high productivity and security of computer systems and computer networks call the interest of specialists in the environment of construction of optimum topologies of computer mediums. In earliest phases of…

Networking and Internet Architecture · Computer Science 2010-07-15 Sanjay Kumar Pal , Samar Sen Sarma

In this article, we are concerned with various aspects of arcs on surfaces. In the first part, we deal with topological aspects of arcs and their complements. We use this understanding, in the second part, to construct interesting actions…

Geometric Topology · Mathematics 2021-02-18 Federica Fanoni , Tyrone Ghaswala , Alan McLeay

Computational topology has recently known an important development toward data analysis, giving birth to the field of topological data analysis. Topological persistence, or persistent homology, appears as a fundamental tool in this field.…

Statistics Theory · Mathematics 2013-05-28 Frédéric Chazal , Marc Glisse , Catherine Labruère , Bertrand Michel

Graphs, and graph transformation systems, are used in many areas within Computer Science: to represent data structures and algorithms, to define computation models, as a general modelling tool to study complex systems, etc. Research in term…

Symbolic Computation · Computer Science 2021-02-04 Patrick Bahr

This proposal presents a graph computing framework intending to support both online and offline computing on large dynamic graphs efficiently. The framework proposes a new data model to support rich evolving vertex and edge data types. It…

Distributed, Parallel, and Cluster Computing · Computer Science 2015-12-08 Zhao Yu Dong

An ordered graph is a graph enhanced with a linear order on the vertex set. An ordered graph is a core if it does not have an order-preserving homomorphism to a proper subgraph. We say that $H$ is the core of $G$ if (i) $H$ is a core, (ii)…

Computational Complexity · Computer Science 2025-12-01 Michal Čertík , Andreas Emil Feldmann , Jaroslav Nešetřil , Paweł Rzążewski

Knowledge graph embeddings are now a widely adopted approach to knowledge representation in which entities and relationships are embedded in vector spaces. In this chapter, we introduce the reader to the concept of knowledge graph…

Artificial Intelligence · Computer Science 2020-05-01 Federico Bianchi , Gaetano Rossiello , Luca Costabello , Matteo Palmonari , Pasquale Minervini

Graphs are used in many disciplines to model the relationships that exist between objects in a complex discrete system. Researchers may wish to compare a network of interest to a "typical" graph from a family (or ensemble) of graphs which…

Combinatorics · Mathematics 2025-08-08 Catherine Greenhill

We determine the optimum topology of quasi-one dimensional nonlinear optical structures using generalized quantum graph models. Quantum graphs are relational graphs endowed with a metric and a multiparticle Hamiltonian acting on the edges,…

Quantum Physics · Physics 2015-06-19 Rick Lytel , Shoresh Shafei , Mark G. Kuzyk

This paper considers the problem of embedding directed graphs in Euclidean space while retaining directional information. We model a directed graph as a finite set of observations from a diffusion on a manifold endowed with a vector field.…

Machine Learning · Statistics 2014-06-03 Dominique Perrault-Joncas , Marina Meila
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