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We study the relation between the persistent homology and the spectral sequence of a filtered chain complex over a field. Our method is based on a decomposition of the persistent homology. We demonstrate that, under fairly general…

Algebraic Topology · Mathematics 2024-03-25 Peiqi Yang , Yingfeng Hu , Hao Wu

The paper studies the relation between critical simplices and persistence diagrams of the \v{C}ech filtration. We show that adding a critical $k$-simplex into the filtration corresponds either to a point in the $k$th persistence diagram or…

Probability · Mathematics 2019-02-22 Khanh Duy Trinh

The long computational time and large memory requirements for computing Vietoris Rips persistent homology from point clouds remains a significant deterrent to its application to big data. This paper aims to reduce the memory footprint of…

Algebraic Topology · Mathematics 2024-12-12 Musashi Ayrton Koyama , Vanessa Robins , Katharine Turner

Persistent Homology (PH) has been successfully used to train networks to detect curvilinear structures and to improve the topological quality of their results. However, existing methods are very global and ignore the location of topological…

Computer Vision and Pattern Recognition · Computer Science 2022-12-27 Doruk Oner , Adélie Garin , Mateusz Koziński , Kathryn Hess , Pascal Fua

We study the inverse problem for persistent homology: For a fixed simplicial complex $K$, we analyse the fiber of the continuous map $\mathrm{PH}$ on the space of filters that assigns to a filter $f: K \to \mathbb R$ the total barcode of…

Algebraic Topology · Mathematics 2022-04-12 Jacob Leygonie , Ulrike Tillmann

We introduce a new invariant defined on the vertices of a given filtered simplicial complex, called codensity, which controls the impact of removing vertices on persistent homology. We achieve this control through the use of an interleaving…

Algebraic Topology · Mathematics 2018-01-10 Facundo Mémoli , Osman Berat Okutan

Given a finite set $A\subset\mathbb{R}^d$, let Cov$_{r,k}$ denote the set of all points within distance $r$ to at least $k$ points of $A$. Allowing $r$ and $k$ to vary, we obtain a 2-parameter family of spaces that grow larger when $r$…

Computational Geometry · Computer Science 2022-04-15 René Corbet , Michael Kerber , Michael Lesnick , Georg Osang

We define persistent homology groups over any set of spaces which have inclusions defined so that the corresponding directed graph between the spaces is acyclic, as well as along any subgraph of this directed graph. This method…

Computational Geometry · Computer Science 2019-06-20 Erin Wolf Chambers , David Letscher

We present a novel method to explicitly incorporate topological prior knowledge into deep learning based segmentation, which is, to our knowledge, the first work to do so. Our method uses the concept of persistent homology, a tool from…

Computer Vision and Pattern Recognition · Computer Science 2019-01-30 James R. Clough , Ilkay Oksuz , Nicholas Byrne , Julia A. Schnabel , Andrew P. King

Tumor segmentation in whole-slide images of histology slides is an important step towards computer-assisted diagnosis. In this work, we propose a tumor segmentation framework based on the novel concept of persistent homology profiles…

Computer Vision and Pattern Recognition · Computer Science 2018-05-11 Talha Qaiser , Yee-Wah Tsang , Daiki Taniyama , Naoya Sakamoto , Kazuaki Nakane , David Epstein , Nasir Rajpoot

The theory of multidimensional persistent homology was initially developed in the discrete setting, and involved the study of simplicial complexes filtered through an ordering of the simplices. Later, stability properties of…

Computational Geometry · Computer Science 2013-03-28 Niccolò Cavazza , Marc Ethier , Patrizio Frosini , Tomasz Kaczynski , Claudia Landi

We consider random filtered complexes built over marked point processes on Euclidean spaces. Examples of our filtered complexes include a filtration of $\check{\textrm{C}}$ech complexes of a family of sets with various sizes, growths, and…

Probability · Mathematics 2021-03-17 Tomoyuki Shirai , Kiyotaka Suzaki

We introduce a linear dimensionality reduction technique preserving topological features via persistent homology. The method is designed to find linear projection $L$ which preserves the persistent diagram of a point cloud $\mathbb{X}$ via…

Machine Learning · Statistics 2021-06-15 Byeongsu Yu , Kisung You

We consider the problem of efficiently computing a discrete Morse complex on simplicial complexes of arbitrary dimension and very large size. Based on a common graph-based formalism, we analyze existing data structures for simplicial…

Computational Geometry · Computer Science 2018-11-13 Ulderico Fugacci , Federico Iuricich , Leila De Floriani

In this paper, we consider topological featurizations of data defined over simplicial complexes, like images and labeled graphs, obtained by convolving this data with various filters before computing persistence. Viewing a convolution…

Algebraic Topology · Mathematics 2024-01-26 Elchanan Solomon , Paul Bendich

Determining whether two graphs are isomorphic is a fundamental problem with practical applications in areas such as molecular chemistry or social network analysis, yet it remains a challenging task, with exact solutions often being…

This paper aims to introduce a filtration analysis of sampled maps based on persistent homology, providing a new method for reconstructing the underlying maps. The key idea is to extend the definition of homology induced maps of…

Algebraic Topology · Mathematics 2019-12-19 Hiroshi Takeuchi

Persistent homology is a mathematical tool used for studying the shape of data by extracting its topological features. It has gained popularity in network science due to its applicability in various network mining problems, including…

Algebraic Topology · Mathematics 2023-06-21 Mehmet Emin Aktas , Thu Nguyen , Rakin Riza , Muhammad Ifte Islam , Esra Akbas

Such modern applications of topology as data analysis and digital image analysis have to deal with noise and other uncertainty. In this environment, topological spaces often appear equipped with a real valued function. Persistence is a…

Algebraic Topology · Mathematics 2011-05-02 Peter Saveliev

Computational topologists recently developed a method, called persistent homology to analyze data presented in terms of similarity or dissimilarity. Indeed, persistent homology studies the evolution of topological features in terms of a…

Quantitative Methods · Quantitative Biology 2017-08-01 Pavel Petrov , Stephen T Rush , Zhichun Zhai , Christine H Lee , Peter T Kim , Giseon Heo