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We study random graph models for directed acyclic graphs, an important class of networks that includes citation networks, food webs, and feed-forward neural networks among others. We propose two specific models, roughly analogous to the…

Physics and Society · Physics 2009-10-16 Brian Karrer , M. E. J. Newman

Systems evolving according to the standard concept of biological or technological evolution are often described by catalytic evolution equations. We study the structure of these equations and find a deep relationship to classical…

Physics and Society · Physics 2007-05-23 Rudolf Hanel , Stuart A. Kauffman , Stefan Thurner

Any directed graph G with N vertices and J edges has an associated line-graph L(G) where the J edges form the vertices of L(G). We show that the non-zero eigenvalues of the adjacency matrices are the same for all graphs of such a family…

Chaotic Dynamics · Physics 2007-05-23 Prot Pakonski , Gregor Tanner , Karol Zyczkowski

This paper introduces graphemes for constructing and analyzing stochastic processes that describe the evolution of large dynamic graphs. Unlike graphons, which capture the static properties of dense graphs via exchangeability or subgraph…

Probability · Mathematics 2025-04-16 Andreas Greven , Frank den Hollander , Anton Klimovsky , Anita Winter

Depending on the node ordering, an adjacency matrix can highlight distinct characteristics of a graph. Deriving a "proper" node ordering is thus a critical step in visualizing a graph as an adjacency matrix. Users often try multiple matrix…

Human-Computer Interaction · Computer Science 2022-03-09 Oh-Hyun Kwon , Chiun-How Kao , Chun-houh Chen , Kwan-Liu Ma

In this paper we completely characterize the graphs which have an edge weighted adjacency matrix belonging to the class of $n \times n$ involutions with spectrum equal to $\{ \lambda_1^{n-2}, \lambda_2^{2} \}$ for some $\lambda_1$ and some…

Combinatorics · Mathematics 2015-04-17 Karen Meagher , Irene Sciriha

We formulate the notion of continuous evolution algebra in terms of differentiable matrix-valued functions, to then study those such algebras arising as solutions of ODE problems. Given their dependence on natural bases, matrix Lie groups…

Rings and Algebras · Mathematics 2022-02-08 Fernando Montaner , Irene Paniello

In this paper we present a method for finding the absorbing radical of a finite-dimensional evolution algebra. Such a method consists of finding the acyclic vertices of an oriented graph associated with the algebra. The set of generators…

Rings and Algebras · Mathematics 2023-06-28 Paula Cadavid , Tiago Reis , Mary Luz Rodiño

This paper introduces a new graph construction, the permutational power of a graph, whose adjacency matrix is obtained by the composition of a permutation matrix with the adjacency matrix of the graph. It is shown that this construction…

Combinatorics · Mathematics 2019-10-29 Matteo Cavaleri , Daniele D'Angeli , Alfredo Donno

Given a graph, we associate each edge with the transposition which exchanges the endvertices. Fixing a linear order on the edge set, we obtain a permutation of the vertices. D\'enes proved that the permutation is a full cyclic permutation…

Combinatorics · Mathematics 2024-04-04 Shuhei Tsujie , Ryo Uchiumi

This work is devoted to the study of the relationships between graph theory and the qualitative analysis of ordinary differential equations, with a special focus on two-dimensional systems. In particular, we reinterpret classical results…

Dynamical Systems · Mathematics 2026-04-01 Marcos Masip

We introduce two novel evolutionary formulations of the problem of coloring the nodes of a graph. The first formulation is based on the relationship that exists between a graph's chromatic number and its acyclic orientations. It views such…

Neural and Evolutionary Computing · Computer Science 2007-05-23 V. C. Barbosa , C. A. G. Assis , J. O. do Nascimento

The adjacency matrix is the most fundamental and intuitive object in graph analysis that is useful not only mathematically but also for visualizing the structures of graphs. Because the appearance of an adjacency matrix is critically…

Social and Information Networks · Computer Science 2023-04-07 Tatsuro Kawamoto , Teruyoshi Kobayashi

Recent studies have shown great promise in applying graph neural networks for multivariate time series forecasting, where the interactions of time series are described as a graph structure and the variables are represented as the graph…

Machine Learning · Computer Science 2022-06-29 Junchen Ye , Zihan Liu , Bowen Du , Leilei Sun , Weimiao Li , Yanjie Fu , Hui Xiong

The representation of graphs is commonly based on the adjacency matrix concept. This formulation is the foundation of most algebraic and computational approaches to graph processing. The advent of deep learning language models offers a wide…

Artificial Intelligence · Computer Science 2025-12-16 Ezequiel Lopez-Rubio

Graphs with diverse structural characteristics play a central role in modelling and optimization tasks. The ability to generate different types of graphs that exhibit shared properties is likewise essential for algorithm selection and…

Neural and Evolutionary Computing · Computer Science 2026-03-31 Hendrik Richter , Frank Neumann

The topological structure of complex networks has fascinated researchers for several decades, resulting in the discovery of many universal properties and reoccurring characteristics of different kinds of networks. However, much less is…

Social and Information Networks · Computer Science 2017-06-28 Yvonne Anne Pignolet , Matthieu Roy , Stefan Schmid , Gilles Tredan

The topological structure of complex networks has fascinated researchers for several decades, resulting in the discovery of many universal properties and reoccurring characteristics of different kinds of networks. However, much less is…

Social and Information Networks · Computer Science 2017-03-02 Yvonne Anne Pignolet , Matthieu Roy , Stefan Schmid , Gilles Tredan

We give a self-contained introduction to the theory of directed graphs, leading up to the relationship between the Perron-Frobenius eigenvectors of a graph and its autocatalytic sets. Then we discuss a particular dynamical system on a fixed…

Adaptation and Self-Organizing Systems · Physics 2007-05-23 Sanjay Jain , Sandeep Krishna

We study a class of complex polynomial equations on a finite graph with a view to understanding how holistic phenomena emerge from combinatorial structure. Particular solutions arise from orthogonal projections of regular polytopes,…

Mathematical Physics · Physics 2011-09-16 Paul Baird