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The design and implementation of a new framework for adaptive mesh refinement (AMR) calculations is described. It is intended primarily for applications in astrophysical fluid dynamics, but its flexible and modular design enables its use…

Instrumentation and Methods for Astrophysics · Physics 2020-07-08 James M. Stone , Kengo Tomida , Christopher J. White , Kyle G. Felker

An adaptive mesh refinement (AMR) scheme is implemented in a distributed environment using Message Passing Interface (MPI) to find solutions to the nonlinear sigma model. Previous work studied behavior similar to black hole critical…

General Relativity and Quantum Cosmology · Physics 2015-06-25 Steven L. Liebling

Hero-class HPC simulations rely on Adaptive Mesh Refinement (AMR) to reduce compute and memory demands while maintaining accuracy. This work analyzes the performance of Parthenon, a block-structured AMR benchmark, on CPU-GPU systems. We…

Distributed, Parallel, and Cluster Computing · Computer Science 2025-09-25 Akash Poptani , Alireza Khadem , Scott Mahlke , Jonah Miller , Joshua Dolence , Reetuparna Das

The problem of the resolution of turbulent flows in adaptive mesh refinement (AMR) simulations is investigated by means of 3D hydrodynamical simulations in an idealised setup, representing a moving subcluster during a merger event. AMR…

Astrophysics · Physics 2009-11-13 L. Iapichino , J. Adamek , W. Schmidt , J. C. Niemeyer

We propose a novel approach to extracting crack-free iso-surfaces from Structured AMR data that is more general than previous techniques, is trivially simple to implement, requires no information other than the list of AMR cells, and works,…

Graphics · Computer Science 2020-04-21 Ingo Wald

Efforts to achieve better accuracy in numerical relativity have so far focused either on implementing second order accurate adaptive mesh refinement or on defining higher order accurate differences and update schemes. Here, we argue for the…

General Relativity and Quantum Cosmology · Physics 2009-11-11 Luis Lehner , Steven L. Liebling , Oscar Reula

Computationally solving the equations of elasticity is a key component in many materials science and mechanics simulations. Phenomena such as deformation-induced microstructure evolution, microfracture, and microvoid nucleation are examples…

Computational Engineering, Finance, and Science · Computer Science 2021-12-08 Brandon Runnels , Vinamra Agrawal , Weiqun Zhang , Ann Almgren

We present results of 3D numerical simulations using a finite difference code featuring fixed mesh refinement (FMR), in which a subset of the computational domain is refined in space and time. We apply this code to a series of test cases…

General Relativity and Quantum Cosmology · Physics 2010-04-06 Erik Schnetter , Scott H. Hawley , Ian Hawke

Morphological reconstruction (MR) is often employed by seeded image segmentation algorithms such as watershed transform and power watershed as it is able to filter seeds (regional minima) to reduce over-segmentation. However, MR might…

Computer Vision and Pattern Recognition · Computer Science 2019-10-02 Tao Lei , Xiaohong Jia , Tongliang Liu , Shigang Liu , Hongying Meng , Asoke K. Nandi

GPUs and other accelerators are increasingly used for scientific computing. In the future, we want to add GPU support to parallel adaptive mesh refinement (AMR) codes written in Fortran. To understand which changes are necessary to obtain…

We present the design and implementation details of a geometric multigrid method on adaptively refined meshes for massively parallel computations. The method uses local smoothing on the refined part of the mesh. Partitioning is achieved by…

Numerical Analysis · Computer Science 2021-08-04 Thomas C. Clevenger , Timo Heister , Guido Kanschat , Martin Kronbichler

Despite the rapidly evolving field of computational electromagnetics, few open-source tools have managed to tackle the problem of automatic mesh generation for properly discretizing the problem of interest into a finite set of elements…

Signal Processing · Electrical Eng. & Systems 2022-09-22 Apostolos Spanakis-Misirlis

In this paper we present a full-fledged scheme for the second order accurate, divergence-free evolution of vector fields on an adaptive mesh refinement (AMR) hierarchy. We focus here on adaptive mesh MHD. The scheme is based on making a…

Astrophysics · Physics 2009-11-07 Dinshaw Balsara

The increasing demand for larger and higher fidelity simulations has made Adaptive Mesh Refinement (AMR) and unstructured mesh techniques essential to focus compute effort and memory cost on just the areas of interest in the simulation…

Graphics · Computer Science 2025-01-23 Xuan Huang , Will Usher , Valerio Pascucci

Cartesian-grid methods with Adaptive Mesh Refinement (AMR) are ideally suited for simulating the breaking of waves, the formation of spray, and the entrainment of air around ships. As a result of the cartesian-grid formulation, minimal…

Mesh reconstruction is a cornerstone process across various applications, including in-silico trials, digital twins, surgical planning, and navigation. Recent advancements in deep learning have notably enhanced mesh reconstruction speeds.…

Image and Video Processing · Electrical Eng. & Systems 2025-05-22 Fengting Zhang , Boxu Liang , Qinghao Liu , Min Liu , Xiang Chen , Yaonan Wang

Surface reconstruction with preservation of geometric features is a challenging computer vision task. Despite significant progress in implicit shape reconstruction, state-of-the-art mesh extraction methods often produce aliased,…

Computer Vision and Pattern Recognition · Computer Science 2023-12-01 Natalia Soboleva , Olga Gorbunova , Maria Ivanova , Evgeny Burnaev , Matthias Nießner , Denis Zorin , Alexey Artemov

We present a GPU-native mesh adaptation procedure that incorporates a complex geometry represented with a triangle mesh within a primary Cartesian computational grid organized as a forest of octrees. A C++/CUDA program implements the…

Computational Geometry · Computer Science 2025-02-25 Khodr Jaber , Ebenezer E. Essel , Pierre E. Sullivan

Neural Radiance Fields (NeRF) have constituted a remarkable breakthrough in image-based 3D reconstruction. However, their implicit volumetric representations differ significantly from the widely-adopted polygonal meshes and lack support…

Computer Vision and Pattern Recognition · Computer Science 2023-08-22 Jiaxiang Tang , Hang Zhou , Xiaokang Chen , Tianshu Hu , Errui Ding , Jingdong Wang , Gang Zeng

The forest-of-refinement-trees approach allows for dynamic adaptive mesh refinement (AMR) at negligible cost. While originally developed for quadrilateral and hexahedral elements, previous work established the theory and algorithms for…

Distributed, Parallel, and Cluster Computing · Computer Science 2026-05-25 David Knapp , Johannes Albrecht Holke , Thomas Spenke , Carsten Burstedde , Lukas Dreyer