Related papers: Guess & Check Codes for Deletions and Synchronizat…
We prove the following results concerning the list decoding of error-correcting codes: (i) We show that for \textit{any} code with a relative distance of $\delta$ (over a large enough alphabet), the following result holds for \textit{random…
Insdel errors occur in communication systems caused by the loss of positional information of the message. Since the work by Guruswami and Wang, there have been some further investigations on the list decoding of insertion codes, deletion…
The design of large libraries of oligonucleotides having constant GC-content and satisfying Hamming distance constraints between oligonucleotides and their Watson-Crick complements is important in reducing hybridization errors in DNA…
This paper provides a new instance of quantum deletion error-correcting codes. This code can correct any single quantum deletion error, while our code is only of length 4. This paper also provides an example of an encoding quantum circuit…
We propose coding techniques that limit the length of homopolymers runs, ensure the GC-content constraint, and are capable of correcting a single edit error in strands of nucleotides in DNA-based data storage systems. In particular, for…
In this work, we study linear error-correcting codes against adversarial insertion-deletion (indel) errors. While most constructions for the indel model are nonlinear, linear codes offer compact representations, efficient encoding, and…
Gradient descent (GD) methods are commonly employed in machine learning problems to optimize the parameters of the model in an iterative fashion. For problems with massive datasets, computations are distributed to many parallel computing…
Two of the most common models for channels with synchronisation errors are the Binary Deletion Channel with parameter $p$ ($\text{BDC}_p$) -- a channel where every bit of the codeword is deleted i.i.d with probability $p$, and the Poisson…
Identifying palindromes in sequences has been an interesting line of research in combinatorics on words and also in computational biology, after the discovery of the relation of palindromes in the DNA sequence with the HIV virus. Efficient…
Explicit non-asymptotic upper bounds on the sizes of multiple-deletion correcting codes are presented. In particular, the largest single-deletion correcting code for $q$-ary alphabet and string length $n$ is shown to be of size at most…
We consider generalized low-density parity-check (GLDPC) codes with component codes that are duals of Cordaro-Wagner codes. Two efficient decoding algorithms are proposed: one based on Hartmann-Rudolph processing, analogous to Sum-Product…
This paper is concerned with a guessing codeword decoding (GCD) of linear block codes. Compared with the guessing noise decoding (GND), which is only efficient for high-rate codes, the GCD is efficient for not only high-rate codes but also…
Erasure coding is a storage-efficient alternative to replication for achieving reliable data backup in distributed storage systems. During the storage process, traditional erasure codes require a unique source node to create and upload all…
Two-dimensional error-correcting codes, where codewords are represented as $n \times n$ arrays over a $q$-ary alphabet, find important applications in areas such as QR codes, DNA-based storage, and racetrack memories. Among the possible…
The sequence reconstruction problem, introduced by Levenshtein in 2001, considers a communication scenario where the sender transmits a codeword from some codebook and the receiver obtains multiple noisy reads of the codeword. Motivated by…
In this paper, we introduce a new practical and general method for solving the main problem of designing the capacity approaching, optimal rate, irregular low-density parity-check (LDPC) code ensemble over binary erasure channel (BEC).…
Maximum-distance-separable (MDS) codes are a class of erasure codes that are widely adopted to enhance the reliability of distributed storage systems (DSS). In (n, k) MDS coded DSS, the original data are stored into n distributed nodes in…
Erasure coding techniques are used to increase the reliability of distributed storage systems while minimizing storage overhead. Also of interest is minimization of the bandwidth required to repair the system following a node failure. In a…
As a medium for cold data storage, DNA stands out as it promises significant gains in storage capacity and lifetime. However, it comes with its own data processing challenges to overcome. Constrained codes over the DNA alphabet…
This paper studies the cardinality of codes correcting insertions and deletions. We give improved upper and lower bounds on code size. Our upper bound is obtained by utilizing the asymmetric property of list decoding for insertions and…