Related papers: Rooted trees with the same plucking polynomial
We consider bivariate polynomials over the skew field of quaternions, where the indeterminates commute with all coefficients and with each other. We analyze existence of univariate factorizations, that is, factorizations with univariate…
Dual-tree algorithms are a widely used class of branch-and-bound algorithms. Unfortunately, developing dual-tree algorithms for use with different trees and problems is often complex and burdensome. We introduce a four-part logical split:…
Phylogenetic trees canonically arise as embeddings of phylogenetic networks. We recently showed that the problem of deciding if two phylogenetic networks embed the same sets of phylogenetic trees is computationally hard, \blue{in…
We consider polynomials of bi-degree $(n,1)$ over the skew field of quaternions where the indeterminates commute with each other and with all coefficients. Polynomials of this type do not generally admit factorizations. We recall a…
Self-similarity of random trees is related to the operation of pruning. Pruning $R$ cuts the leaves and their parental edges and removes the resulting chains of degree-two nodes from a finite tree. A Horton-Strahler order of a vertex $v$…
Given a connected undirected graph $G$, a spanning tree is a subgraph $T$ of $G$ such that $V(T) = V(G)$ and $T$ is a tree. A collection of $\ell$ spanning trees $T_1,\ldots,T_\ell$ is pairwise $k$-diverse if for every $i \neq j$, $|E(T_i)…
This paper presents the novel `uniqueness tree' algorithm, as one possible method for determining whether two finite, undirected graphs are isomorphic. We prove that the algorithm has polynomial time complexity in the worst case, and that…
In this paper, we consider sequences of polynomials that satisfy differential--difference recurrences. Our interest is motivated by the fact that polynomials satisfying such recurrences frequently appear as generating polynomials of integer…
Quasi-trees generalize trees in that the unique "path" between two nodes may be infinite and have any countable order type. They are used to define the rank-width of a countable graph in such a way that it is equal to the least upper-bound…
We consider the lower-triangular matrix of generating polynomials that enumerate $k$-component forests of rooted trees on the vertex set $[n]$ according to the number of improper edges (generalizations of the Ramanujan polynomials). We show…
Highly efficient and even nearly optimal algorithms have been developed for the classical problem of univariate polynomial root-finding (see, e.g., \cite{P95}, \cite{P02}, \cite{MNP13}, and the bibliography therein), but this is still an…
Given a rooted tree $T$ with leaves $v_1,v_2,\ldots,v_n$, we define the ancestral matrix $C(T)$ of $T$ to be the $n \times n$ matrix for which the entry in the $i$-th row, $j$-th column is the level (distance from the root) of the first…
A tree-based network $N$ on $X$ is called universal if every phylogenetic tree on $X$ is a base tree for $N$. Recently, binary universal tree-based networks have attracted great attention in the literature and their existence has been…
We bound the location of roots of polynomials that have nonnegative coefficients with respect to a fixed but arbitrary basis of the vector space of polynomials of degree at most $d$. For this, we interpret the basis polynomials as vector…
The roots of any polynomial of degree m with complex integer coefficients can be computed by manipulation of sequences made from distinct symbols and counting the different symbols in the sequences. This method requires only primitive…
It has recently been shown that the NP-hard problem of calculating the minimum number of hybridization events that is needed to explain a set of rooted binary phylogenetic trees by means of a hybridization network is fixed-parameter…
We consider the problem of inferring an ancestral state from observations at the leaves of a tree, assuming the state evolves along the tree according to a two-state symmetric Markov process. We establish a general branching rate condition…
By weighted tree we understand such connected tree,that: a) each its vertex and each edge have a positive integer weight; b) the weight of each vertex is equal to the sum of weights of outgoing edges. Each tree has a binary structure --- we…
We propose an approach to constructing iterative methods for finding polynomial roots simultaneously. One feature of this approach is using the fundamental theorem of symmetric polynomials. Within this framework, we reconstruct many of the…
This work builds on the notion of record of rooted trees. We provide an alternative definition of parking functions, derive from it a record-preserving bijection between rooted trees and parking functions, and establish a join…