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We apply a recently developed model of cytoskeletal force generation to study a cell intrinsic contractility, as well as its response to external loading. The model is based on a non-equilibrium thermodynamic treatment of the…

Subcellular Processes · Quantitative Biology 2015-06-19 Mirko Maraldi , Clara Valero , Krishna Garikipati

Many cellular processes are tightly connected to the dynamics of microtubules (MTs). While in neuronal axons MTs mainly regulate intracellular trafficking, they participate in cytoskeleton reorganization in many other eukaryotic cells,…

Subcellular Processes · Quantitative Biology 2017-12-19 M. Reza Shaebani , Aravind Pasula , Albrecht Ott , Ludger Santen

A central idea in understanding brains and building artificial intelligence is that structure determines function. Yet, how the brain's complex structure arises from a limited set of genetic instructions remains a key question. The ultra…

Neurons and Cognition · Quantitative Biology 2026-01-28 Xingyu Liu , Yubin Li , Guozhang Chen

Plant morphology emerges from cellular growth and structure. The turgor-driven diffuse growth of a cell can be highly anisotropic: significant longitudinally and negligible radially. Such anisotropy is ensured by cellulose microfibrils…

Quantitative Methods · Quantitative Biology 2022-08-23 Jeevanjyoti Chakraborty , Jingxi Luo , Rosemary J Dyson

The microtubule (MT) motor Kip3p is very processive kinesin that promotes catastrophes and pausing in particular on cortical contact. These properties explain the role of Kip3p in positioning the mitotic spindle in budding yeast and…

Quantitative Methods · Quantitative Biology 2018-02-05 Chikashi Arita , Jonas Bosche , Alexander Lück , Ludger Santen

Cell crawling crucially depends on the collective dynamics of the acto-myosin cytoskeleton. However, it remains an open question to what extent cell polarization and persistent motion depend on continuous regulatory mechanisms and…

Biological Physics · Physics 2023-08-11 Fenna Stegemerten , Karin John , Uwe Thiele

Columnar defects provide effective pinning centers for magnetic flux lines in high--$T_{\rm c}$ superconductors. Utilizing a mapping of the statistical mechanics of directed lines to the quantum mechanics of two--dimensional bosons, one…

Condensed Matter · Physics 2011-12-07 Uwe C. Täuber

Building on the striking similarity between the structure of the spindle during mitosis in living cells and nematic textures in confined liquid crystals, we use a continuum model of two-dimensional nematic liquid crystal droplets, to…

Soft Condensed Matter · Physics 2017-02-24 Marco Leoni , Oksana V. Manyuhina , Mark J. Bowick , M. Cristina Marchetti

The behaviour and fate of tissue cells is controlled by the rigidity and geometry of their adhesive environment, possibly through forces localized to sites of adhesion. We introduce a mechanical model that predicts cellular force…

Cell Behavior · Quantitative Biology 2009-07-24 Ilka B. Bischofs , Sebastian S. Schmidt , Ulrich S. Schwarz

The existence of thresholdless vortex solitons trapped at the core of disclination lattices that realize higher-order topological insulators is reported. The study demonstrates the interplay between nonlinearity and higher-order topology in…

Pattern Formation and Solitons · Physics 2024-09-27 Changming Huang , Ce Shang , Yaroslav V. Kartashov , Fangwei Ye

We report on the controllable pinning of domain walls in stripes with perpendicular magnetic anisotropy by magnetostatic coupling to magnetic vortices in disks located above the stripe. Pinning mechanisms and depinning fields are reported.…

Mesoscale and Nanoscale Physics · Physics 2017-06-13 R. L. Novak , L. C. Sampaio

We report a motility-induced pinning transition in the active Ising model for a self-propelled particle system with discrete symmetry. This model was known to exhibit a liquid-gas type flocking phase transition, but a recent study reveals…

Statistical Mechanics · Physics 2026-04-09 Chul-Ung Woo , Jae Dong Noh

Observations of single epidermal cells on flat adhesive substrates have revealed two distinct morphological and functional states, namely a non-migrating symmetric unpolarized state and a migrating asymmetric polarized state. These states…

Biological Physics · Physics 2010-04-14 Wolfgang Alt , Martin Bock , Christoph Möhl

The ability to control the movement and assembly of particles in liquid crystals is not only an important route to design functional materials, but also sheds light on the mechanisms of colloidal interactions. In this study we place…

Soft Condensed Matter · Physics 2018-08-07 Yimin Luo , Francesca Serra , Kathleen J. Stebe

Epithelial cell layers on soft elastic substrates or pillar arrays are commonly used as model systems for investigating the role of force in tissue growth, maintenance and repair. Here we show analytically that the experimentally observed…

Tissues and Organs · Quantitative Biology 2012-01-16 Carina M. Edwards , Ulrich S. Schwarz

The experimental use of micropatterned quasi-1D substrates has emerged as an useful experimental tool to study the nature of cell-cell interactions and gain insight on collective behaviour of cell colonies. Inspired by these experiments, we…

Soft Condensed Matter · Physics 2025-07-31 Harshal Potdar , Ignacio Pagonabarraga , Sudipto Muhuri

In this work, we study in detail the distribution of stochastic forces generated by the molecular motors activity, in the actin cortex of pre-muscular cells. By combining active and passive rheology experiments, performed on the same…

Biological Physics · Physics 2019-12-10 P. Bohec , J. Tailleur , F. van Wijland , A. Richert , F. Gallet

We investigate the mechanical interplay between the spatial organization of the actin cytoskeleton and the shape of animal cells adhering on micropillar arrays. Using a combination of analytical work, computer simulations and in vitro…

The microtubule cytoskeleton is responsible for sustained, long-range intracellular transport of mRNAs, proteins, and organelles in neurons. Neuronal microtubules must be stable enough to ensure reliable transport, but they also undergo…

Dynamical Systems · Mathematics 2024-03-05 Anna C Nelson , Melissa M Rolls , Maria-Veronica Ciocanel , Scott A McKinley

Grid cells in the medial entorhinal cortex (MEC) respond when an animal occupies a periodic lattice of "grid fields" in the environment. The grids are organized in modules with spatial periods, or scales, clustered around discrete values…

Neurons and Cognition · Quantitative Biology 2019-03-13 Louis Kang , Vijay Balasubramanian