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Many organisms live in populations structured by space and by class, exhibit plastic responses to their social partners, and are subject to non-additive ecological and fitness effects. Social evolution theory has long recognized that all of…

Populations and Evolution · Quantitative Biology 2014-04-24 Jeremy Van Cleve , Erol Akçay

Long-range interactions are ubiquitous in nature, where they are mediated by diffusive fields at the cellular scale or by visual cues for groups of animals. Short-range forces, which are paradigmatic in physics, can thus often be neglected…

Soft Condensed Matter · Physics 2025-07-15 Quan Manh Nguyen , Alberto Dinelli , Gianmarco Spera , Julien Tailleur

Active inference helps us simulate adaptive behavior and decision-making in biological and artificial agents. Building on our previous work exploring the relationship between active inference, well-being, resilience, and sustainability, we…

Artificial Intelligence · Computer Science 2024-06-13 Mahault Albarracin , Ines Hipolito , Maria Raffa , Paul Kinghorn

How large ecosystems can create and maintain the remarkable biodiversity we see in nature is probably one of the biggest open questions in science, attracting attention from different fields, from Theoretical Ecology to Mathematics and…

Populations and Evolution · Quantitative Biology 2023-01-03 Violeta Calleja-Solanas , Nagi Khalil , Jesús Gómez-Gardeñes , Emilio Hernández-García , Sandro Meloni

We propose a Self-Regulated Swarm (SRS) algorithm which hybridizes the advantageous characteristics of Swarm Intelligence as the emergence of a societal environmental memory or cognitive map via collective pheromone laying in the landscape…

Neural and Evolutionary Computing · Computer Science 2007-05-23 Vitorino Ramos , Carlos Fernandes , Agostinho C. Rosa

Popular hypotheses about the origins of collective adaptation are related to two basic behaviours: protection from predators and a combined search for food resources. Among the anti-predator explanations, the predator confusion hypothesis…

Multiagent Systems · Computer Science 2022-09-15 Georgi Ivanov , George Palamas

Organisms from microbes to humans engage in a variety of social behaviors, which affect fitness in complex, often nonlinear ways. The question of how these behaviors evolve has consequences ranging from antibiotic resistance to human…

Populations and Evolution · Quantitative Biology 2024-06-17 Benjamin Allen , Abdur-Rahman Khwaja , James L. Donahue , Cassidy Lattanzio , Yulia A. Dementieva , Christine Sample

Swarms, such as schools of fish or drone formations, are prevalent in both natural and engineered systems. While previous works have focused on the social interactions within swarms, the role of external perturbations--such as environmental…

Quantitative Methods · Quantitative Biology 2025-07-08 Jonathan Karin , Zoe Piran , Mor Nitzan

The effect of disturbance on a model ecosystem of sessile and mutually competitive species [Mathiesen et al. Phys. Rev. Lett. 107, 188101 (2011); Mitarai et al. Phys. Rev. E 86, 011929 (2012) ] is studied. The disturbance stochastically…

Populations and Evolution · Quantitative Biology 2015-06-18 Filippo Botta , Namiko Mitarai

We analyse the stability of linear dynamical systems defined on sparse, random graphs with predator-prey, competitive, and mutualistic interactions. These systems are aimed at modelling the stability of fixed points in large systems defined…

Statistical Mechanics · Physics 2025-01-30 Andrea Marcello Mambuca , Chiara Cammarota , Izaak Neri

In large populations, multiple beneficial mutations may be simultaneously spreading. In asexual populations, these mutations must either arise on the same background or compete against each other. In sexual populations, recombination can…

Populations and Evolution · Quantitative Biology 2013-12-19 D. B. Weissman , O. Hallatschek

Adaptation is used by biological sensory systems to respond to a wide range of environmental signals, by adapting their response properties to the statistics of the stimulus in order to maximize information transmission. We derive rules of…

Neurons and Cognition · Quantitative Biology 2021-04-14 Daniele Conti , Thierry Mora

The functioning of many biochemical networks is often robust -- remarkably stable under changes in external conditions and internal reaction parameters. Much recent work on robustness and evolvability has focused on the structure of neutral…

Quantitative Methods · Quantitative Biology 2011-03-15 Bryan C. Daniels , Yan-Jiun Chen , James P. Sethna , Ryan N. Gutenkunst , Christopher R. Myers

Collective decision-making arises from individual agents integrating their own personal observations with information obtained from social partners. In many biological systems that exhibit collective decision-making, the process by which…

Quantitative Methods · Quantitative Biology 2026-04-28 Ling-Wei Kong , Naomi Ehrich Leonard , Andrew M. Hein

We investigate the selective forces that promote the emergence of modularity in nature. We demonstrate the spontaneous emergence of modularity in a population of individuals that evolve in a changing environment. We show that the level of…

Molecular Networks · Quantitative Biology 2009-11-13 Jiankui He , Jun Sun , Michael W. Deem

The emerging collective motions of swarms of interacting agents are a subject of great interest in application areas ranging from biology to physics and robotics. In this paper, we conduct a careful analysis of the collective dynamics of a…

Adaptation and Self-Organizing Systems · Physics 2014-09-04 Klementyna Szwaykowska , Luis Mier-y-Teran Romero , Ira B. Schwartz

Our wellbeing depends as much on our personal success, as it does on the success of our society. The realization of this fact makes cooperation a very much needed trait. Experiments have shown that rewards can elevate our readiness to…

Physics and Society · Physics 2012-09-12 Attila Szolnoki , Matjaz Perc

We consider the effects of social learning on the individual learning and genetic evolution of a colony of artificial agents capable of genetic, individual and social modes of adaptation. We confirm that there is strong selection pressure…

Artificial Intelligence · Computer Science 2014-06-12 Chris Marriott , Jobran Chebib

We studied the long-term dynamics of evolutionary Swarm Chemistry by extending the simulation length ten-fold compared to earlier work and by developing and using a new automated object harvesting method. Both macroscopic dynamics and…

Adaptation and Self-Organizing Systems · Physics 2018-06-05 Hiroki Sayama

One of the most highly debated questions in the field of animal swarming and social behaviour, is the collective random patterns and chaotic behaviour formed by some animal species, in particular if there is a danger. Is such a behaviour…

Populations and Evolution · Quantitative Biology 2017-01-04 Usama Kadri , Franz Brümmer , Anan Kadri