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So far mutations analysis was performed in terms of transitions and trasversions, so on the basis of the molecule, or in terms of GC-content and isochors, through the quantification of GC->AT mutations over AT->GC mutations. We tried a…

Other Quantitative Biology · Quantitative Biology 2014-11-19 Valentina Agoni

A sequence of reversals that takes a signed permutation to the identity is perfect if at no step a common interval is broken. Determining a parsimonious perfect sequence of reversals that sorts a signed permutation is NP-hard. Here we show…

Combinatorics · Mathematics 2009-05-18 Mathilde Bouvel , Cedric Chauve , Marni Mishna , Dominique Rossin

Baxter permutations are known to be in bijection with a wide number of combinatorial objects. Previously, it was shown that each of these objects had a natural involution which was carried equivariantly by the known bijections, and the…

Combinatorics · Mathematics 2017-10-20 Kevin Dilks

Given a graph, we associate each edge with the transposition which exchanges the endvertices. Fixing a linear order on the edge set, we obtain a permutation of the vertices. D\'enes proved that the permutation is a full cyclic permutation…

Combinatorics · Mathematics 2024-04-04 Shuhei Tsujie , Ryo Uchiumi

Permutation Matrices are a well known class of matrices which encode the elements of the symmetric group on $d$ elements as a square $d\times d$ matrix. Motivated by [4], we define a similar class of matrices which are a generalization of…

Rings and Algebras · Mathematics 2024-03-06 Steven Robert Lippold

A permutation is called {\it {block-wise simple}} if it contains no interval of the form $p_1\oplus p_2$ or $p_1 \ominus p_2$. We present this new set of permutations and explore some of its combinatorial properties. We present a generating…

Combinatorics · Mathematics 2023-03-24 Eli Bagno , Estrella Eisenberg , Shulamit Reches , Moriah Sigron

Permutations are usually enumerated by size, but new results can be found by enumerating them by inversions instead, in which case one must restrict one's attention to indecomposable permutations. In the style of the seminal paper by Simion…

Combinatorics · Mathematics 2025-05-28 Atli Fannar Franklín

We present a general theorem characterizing the relationship between the prime base $p$ representations of non-negative integers $x$ and their positive integer powers, $x^n$. For any positive integer $l$, the theorem establishes the…

Number Theory · Mathematics 2019-07-04 John S. McCaskill , Peter R. Wills

In this dissertation, we explore the structure of inversion graphs of permutations--a class of graphs that naturally arises by representing each permutation as a graph, where vertices correspond to entries and edges encode inversions.…

Combinatorics · Mathematics 2025-06-30 Sean Mandrick

Let S_n(321) (respectively, S_n(132)) denote the set of all permutations of {1,2,...,n} that avoid the pattern 321 (respectively, the pattern 132). Elizalde and Pak gave a bijection Theta from S_n(321) to S_n(132) that preserves the numbers…

Combinatorics · Mathematics 2010-08-27 Dan Saracino

This paper is continuation of the systematic study of distribution of quadrant marked mesh patterns. We study quadrant marked mesh patterns on up-down and down-up permutations, also known as alternating and reverse alternating permutations,…

Combinatorics · Mathematics 2012-05-04 Sergey Kitaev , Jeffrey Remmel

We present identities for permutations with fixed points. The formulas are based on successive derivations or integrations of the determinant of a particular matrix.

Combinatorics · Mathematics 2025-11-10 Jean-Christophe Pain

Given observations from a stationary time series, permutation tests allow one to construct exactly level $\alpha$ tests under the null hypothesis of an i.i.d. (or, more generally, exchangeable) distribution. On the other hand, when the null…

Statistics Theory · Mathematics 2020-09-09 Joseph P. Romano , Marius A. Tirlea

An algorithm is presented for unranking permutations in transposition order: Given a seed s\in N, the algorithm produces a permutation P(s) that differs from the permutation P(s+1) by the transposition of two elements.

Combinatorics · Mathematics 2008-06-10 Konstantinos A. Blekos

We consider the problem of factoring permutations as a product of special types of transpositions, namely, those transpositions involving two positions with bounded distances. In particular, we investigate the minimum number, $\delta$, such…

Combinatorics · Mathematics 2015-06-08 Zejun Huang , Chi-Kwong Li , Sharon H. Li , Nung-Sing Sze

We propose new positive definite kernels for permutations. First we introduce a weighted version of the Kendall kernel, which allows to weight unequally the contributions of different item pairs in the permutations depending on their ranks.…

Machine Learning · Statistics 2018-06-13 Yunlong Jiao , Jean-Philippe Vert

This dissertation presents a multifaceted look into the structural decomposition of permutation classes. The theory of permutation patterns is a rich and varied field, and is a prime example of how an accessible and intuitive definition…

Combinatorics · Mathematics 2014-10-13 Cheyne Homberger

A permutation P on {1,..,N} is a_fast_forward_permutation_ if for each m the computational complexity of evaluating P^m(x)$ is small independently of m and x. Naor and Reingold constructed fast forward pseudorandom cycluses and involutions.…

Cryptography and Security · Computer Science 2010-11-02 Boaz Tsaban

We find a formula for the number of permutations of $[n]$ that have exactly $s$ runs up and down. The formula is at once terminating, asymptotic, and exact.

Combinatorics · Mathematics 2007-05-23 E. Rodney Canfield , Herbert S. Wilf

An infinite permutation is a linear ordering of the set of non-negative integers. Generally, the properties of infinite permutations analogous to those of infinite words show some resemblances and some differences between permutations and…

Combinatorics · Mathematics 2009-11-09 S. V. Avgustinovich , A. E. Frid , T. Kamae , P. V. Salimov