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When designing control strategies for an infectious disease it is critical to identify the key pathways of transmission. Data on infected hosts - when they were born, where they lived and with whom they interacted - can help infer sources…

Quantitative Methods · Quantitative Biology 2026-03-27 Anthony J Wood , Aeron R Sanchez , Rowland R Kao

A $k$-fault-tolerant connectivity preserver of a directed $n$-vertex graph $G$ is a subgraph $H$ such that, for any edge set $F \subseteq E(G)$ of size $|F| \le k$, the strongly connected components of $G - F$ and $H - F$ are the same.…

Data Structures and Algorithms · Computer Science 2025-10-06 Gary Hoppenworth , Thatchaphol Saranurak , Benyu Wang

Given an increasing graph property $\mathcal{P}$, a graph $G$ is $\alpha$-resilient with respect to $\mathcal{P}$ if, for every spanning subgraph $H\subseteq G$ where each vertex keeps more than a $(1-\alpha)$-proportion of its neighbours,…

Combinatorics · Mathematics 2024-06-17 Alberto Espuny Díaz , Lyuben Lichev , Alexandra Wesolek

Graph neural networks (GNNs) are increasingly used to model biological systems, yet the reliability of post-hoc explanation methods for recovering meaningful molecular mechanisms remains unclear. Here, we systematically evaluate four widely…

Molecular Networks · Quantitative Biology 2026-05-22 Kyle Higgins , Ivan Laponogov , Dennis Veselkov , Kirill Veselkov

Due to the increasing discovery and implementation of networks within all disciplines of life, the study of subgraph connectivity has become increasingly important. Motivated by the idea of community (or sub-graph) detection within a…

Combinatorics · Mathematics 2015-05-19 Linda Eroh , Henry Escuardo , Ralucca Gera , Samuel Prahlow , Karl R. B. Schmitt

Let $G=(V,E)$ be a simple graph with $|V|=n$ nodes and $|E|=m$ links, a subset $K \subseteq V$ of \emph{terminals}, a vector $p=(p_1,\ldots,p_m) \in [0,1]^m$ and a positive integer $d$, called \emph{diameter}. We assume nodes are perfect…

Computational Complexity · Computer Science 2014-04-15 Eduardo Canale , Pablo Romero

Objective: In modern healthcare, accurately predicting diseases is a crucial matter. This study introduces a novel approach using graph neural networks (GNNs) and a Graph Transformer (GT) to predict the incidence of heart failure (HF) on a…

Machine Learning · Computer Science 2025-06-23 Heloisa Oss Boll , Ali Amirahmadi , Amira Soliman , Stefan Byttner , Mariana Recamonde-Mendoza

Understanding and developing a correlation measure that can detect general dependencies is not only imperative to statistics and machine learning, but also crucial to general scientific discovery in the big data age. In this paper, we…

Machine Learning · Statistics 2024-06-27 Cencheng Shen , Carey E. Priebe , Joshua T. Vogelstein

If we pick $n$ random points uniformly in $[0,1]^d$ and connect each point to its $k-$nearest neighbors, then it is well known that there exists a giant connected component with high probability. We prove that in $[0,1]^d$ it suffices to…

Combinatorics · Mathematics 2017-11-15 George C. Linderman , Gal Mishne , Yuval Kluger , Stefan Steinerberger

We define a general variant of the graph clustering problem where the criterion of density for the clusters is (high) connectivity. In {\sc Clustering to Given Connectivities}, we are given an $n$-vertex graph $G$, an integer $k$, and a…

Data Structures and Algorithms · Computer Science 2018-04-23 Petr A. Golovach , Dimitrios M. Thilikos

This work investigates the challenge of learning and reasoning for Commonsense Question Answering given an external source of knowledge in the form of a knowledge graph (KG). We propose a novel graph neural network architecture, called…

Computation and Language · Computer Science 2022-09-22 Chen Zheng , Parisa Kordjamshidi

We propose the joint graph attention neural network (GAT), clustering with adaptive neighbors (CAN) and probabilistic graphical model for dynamic power flow analysis and fault characteristics. In fact, computational efficiency is the main…

Machine Learning · Computer Science 2025-03-25 Tan Le , Van Le

Graph Neural Networks (GNNs) have emerged as a promising tool to handle data exhibiting an irregular structure. However, most GNN architectures perform well on homophilic datasets, where the labels of neighboring nodes are likely to be the…

Machine Learning · Computer Science 2024-12-03 Victor M. Tenorio , Madeline Navarro , Samuel Rey , Santiago Segarra , Antonio G. Marques

Disease-gene prediction (DGP) refers to the computational challenge of predicting associations between genes and diseases. Effective solutions to the DGP problem have the potential to accelerate the therapeutic development pipeline at early…

Machine Learning · Computer Science 2019-07-15 Vikash Singh , Pietro Lio'

Link prediction aims to estimate the likelihood of connections between pairs of nodes in complex networks, which is beneficial to many applications from friend recommendation to metabolic network reconstruction. Traditional heuristic-based…

Social and Information Networks · Computer Science 2025-04-30 Ke-ke Shang , Junfan Yi , Michael Small , Yijie Zhou

The component connectivity is the generalization of connectivity which is an parameter for the reliability evaluation of interconnection networks. The $g$-component connectivity $c\kappa_{g}(G)$ of a non-complete connected graph $G$ is the…

Combinatorics · Mathematics 2018-03-06 Shuli Zhao , Weihua Yang

We employ the mathematical programming approach in conjunction with the graph theory to study the structure of correspondent banking networks. Optimizing the network requires decisions to be made to onboard, terminate or restrict the bank…

Machine Learning · Computer Science 2019-12-09 Nima Safaei , Ivan A. Sergienko

Graph Neural Networks (GNNs) have proven effective in various medical imaging applications, such as automated disease diagnosis. However, due to the local neighborhood aggregation paradigm in message passing which characterizes these…

Machine Learning · Computer Science 2024-11-05 K. Mancini , I. Rekik

The connectivity of a graph is an important parameter to evaluate its reliability. $k$-restricted connectivity (resp. $R^h$-restricted connectivity) of a graph $G$ is the minimum cardinality of a set $S$ of vertices in $G$, if exists, whose…

Computational Complexity · Computer Science 2026-01-15 Huazhong Lü , Tingzeng Wu

In the analysis of large-scale network data, a fundamental operation is the comparison of observed phenomena to the predictions provided by null models: when we find an interesting structure in a family of real networks, it is important to…

Social and Information Networks · Computer Science 2021-02-26 Katherine Van Koevering , Austin R. Benson , Jon Kleinberg