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Network alignment (NA) aims to find a node mapping between molecular networks of different species that identifies topologically or functionally similar network regions. Analogous to genomic sequence alignment, NA can be used to transfer…

Molecular Networks · Quantitative Biology 2016-04-07 Vipin Vijayan , Tijana Milenkovic

Biological network alignment aims to identify similar regions between networks of different species. Existing methods compute node "similarities" to rapidly identify from possible alignments the "high-scoring" alignments with respect to the…

Molecular Networks · Quantitative Biology 2013-11-12 Vikram Saraph , Tijana Milenković

Network alignment (NA) compares networks with the goal of finding a node mapping that uncovers highly similar (conserved) network regions. Existing NA methods are homogeneous, i.e., they can deal only with networks containing nodes and…

Molecular Networks · Quantitative Biology 2018-03-30 Shawn Gu , John Johnson , Fazle E. Faisal , Tijana Milenkovic

Biological network alignment (NA) aims to identify similar regions between molecular networks of different species. NA can be local or global. Just as the recent trend in the NA field, we also focus on global NA, which can be pairwise (PNA)…

Molecular Networks · Quantitative Biology 2020-04-28 Vipin Vijayan , Shawn Gu , Eric Krebs , Lei Meng , Tijana Milenkovic

Network alignment (NA) aims to find regions of similarities between molecular networks of different species. There exist two NA categories: local (LNA) or global (GNA). LNA finds small highly conserved network regions and produces a…

Molecular Networks · Quantitative Biology 2015-09-30 Lei Meng , Aaron Striegel , Tijana Milenkovic

Social network alignment, aligning different social networks on their common users, is receiving dramatic attention from both academic and industry. All existing studies consider the social network to be static and neglect its inherent…

Social and Information Networks · Computer Science 2019-11-04 Li Sun , Zhongbao Zhang , Pengxin Ji , Jian Wen , Sen Su , Philip S. Yu

Network alignment aims to find regions of topological or functional similarities between networks. In computational biology, it can be used to transfer biological knowledge from a well-studied species to a poorly-studied species between…

Molecular Networks · Quantitative Biology 2014-10-21 Joseph Crawford , Tijana Milenković

Network alignment (NA) is the task of discovering node correspondences across different networks. Although NA methods have achieved remarkable success in a myriad of scenarios, their satisfactory performance is not without prior anchor link…

Social and Information Networks · Computer Science 2022-08-25 Jin-Duk Park , Cong Tran , Won-Yong Shin , Xin Cao

Network alignment (NA) is the task of finding the correspondence of nodes between two networks based on the network structure and node attributes. Our study is motivated by the fact that, since most of existing NA methods have attempted to…

Social and Information Networks · Computer Science 2023-08-21 Jin-Duk Park , Cong Tran , Won-Yong Shin , Xin Cao

Network embeddings learn to represent nodes as low-dimensional vectors to preserve the proximity between nodes and communities of the network for network analysis. The temporal edges (e.g., relationships, contacts, and emails) in dynamic…

Social and Information Networks · Computer Science 2019-06-25 Chuanchang Chen , Yubo Tao , Hai Lin

The alignment of biological networks has the potential to teach us as much about biology and disease as has sequence alignment. Sequence alignment can be optimally solved in polynomial time. In contrast, network alignment is $NP$-hard,…

Molecular Networks · Quantitative Biology 2016-07-12 Nil Mamano , Wayne Hayes

Network alignment, in general, seeks to discover the hidden underlying correspondence between nodes across two (or more) networks when given their network structure. However, most existing network alignment methods have added assumptions of…

Social and Information Networks · Computer Science 2019-02-28 Tyler Derr , Hamid Karimi , Xiaorui Liu , Jiejun Xu , Jiliang Tang

Complex networks are frequently employed to model physical or virtual complex systems. When certain entities exist across multiple systems simultaneously, unveiling their corresponding relationships across the networks becomes crucial. This…

Physics and Society · Physics 2025-04-16 Rui Tang , Ziyun Yong , Shuyu Jiang , Xingshu Chen , Yaofang Liu , Yi-Cheng Zhang , Gui-Quan Sun , Wei Wang

Biological network alignment (NA) aims to find a node mapping between species' molecular networks that uncovers similar network regions, thus allowing for transfer of functional knowledge between the aligned nodes. However, current NA…

Molecular Networks · Quantitative Biology 2020-09-09 Shawn Gu , Tijana Milenkovic

Network embedding has recently emerged as a promising technique to embed nodes of a network into low-dimensional vectors. While fairly successful, most existing works focus on the embedding techniques for static networks. But in practice,…

Social and Information Networks · Computer Science 2020-10-28 Zenan Xu , Zijing Ou , Qinliang Su , Jianxing Yu , Xiaojun Quan , Zhenkun Lin

Analogous to genomic sequence alignment, biological network alignment (NA) aims to find regions of similarities between molecular networks (rather than sequences) of different species. NA can be either local (LNA) or global (GNA). LNA aims…

Molecular Networks · Quantitative Biology 2016-06-07 Lei Meng , Joseph Crawford , Aaron Striegel , Tijana Milenkovic

Network alignment (NA) is the task of discovering node correspondences across multiple networks. Although NA methods have achieved remarkable success in a myriad of scenarios, their effectiveness is not without additional information such…

Social and Information Networks · Computer Science 2024-09-20 Jin-Duk Park , Cong Tran , Won-Yong Shin , Xin Cao

Network alignment is a critical task to a wide variety of fields. Many existing works leverage on representation learning to accomplish this task without eliminating domain representation bias induced by domain-dependent features, which…

Machine Learning · Computer Science 2019-08-16 Huiting Hong , Xin Li , Yuangang Pan , Ivor Tsang

The computational capabilities of a neural network are widely assumed to be determined by its static architecture. Here we challenge this view by establishing that a fixed neural structure can operate in fundamentally different…

Neural and Evolutionary Computing · Computer Science 2025-09-24 Xia Chen

Sequence alignment has had an enormous impact on our understanding of biology, evolution, and disease. The alignment of biological {\em networks} holds similar promise. Biological networks generally model interactions between biomolecules…

Molecular Networks · Quantitative Biology 2019-11-25 Wayne B. Hayes
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