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The magnetic field plays a crucial role in heating the solar corona, but the exact energy release mechanism(s) is(are) still unknown. Here, we investigate in detail, the process of magnetic energy release in a situation where two initially…

Astrophysics · Physics 2009-11-10 K. Galsgaard , C. E. Parnell

The usefulness of the three-body mechanism of $\eta$-meson production is tested by extending to high energies a recently developed two step model of the $p d \to ^3$He $\eta$ reaction by us, which was successful in reproducing the energy…

Nuclear Theory · Physics 2009-11-10 K. P. Khemchandani , N. G. Kelkar , B. K. Jain

Shortcuts to adiabaticity let a system reach the results of a slow adiabatic process in a shorter time. We propose to quantify the "energy cost" of the shortcut by the energy consumption of the system enlarged by including the control…

In the derivation of the thermodynamics of overdamped systems, one ignores the kinetic energy contribution, since the velocity is a slow variable. In this paper, we show that the kinetic energy needs to be present in the calculation of the…

Statistical Mechanics · Physics 2022-10-11 Pedro V. Paraguassú , Rui Aquino , Lucianno Defaveri , Welles A. M. Morgado

There are some misnomers and misconceptions about what is heat and what is work; the recognition of heat and work is even more difficult when it comes to categorize energy as heat or work. Since both heat and work are energy the…

General Physics · Physics 2010-04-09 R. C. Gupta , Anirudh Pradhan , Sushant Gupta

The process of deriving an interatomic potentials represents an attempt to integrate out the electronic degrees of freedom from the full quantum description of a condensed matter system. In practice it is the derivatives of the interatomic…

Materials Science · Physics 2016-06-23 G. J. Ackland

The anthropogenic emissions of greenhouse gases (GHG) are widely realized as the predominant drivers of global warming, but the huge and increasing anthropogenic direct heat emissions (AHE) has not gained enough attention in terms of its…

Atmospheric and Oceanic Physics · Physics 2015-12-04 Fei Wang , Xingmin Mu , Guangju Zhao , Peng Gao , Pengfei Li

The biological cell exhibits a fantastic range of behaviors, but ultimately these are governed by a handful of physical and chemical principles. Here we explore simple theory, known for decades and based on the simple thermodynamics of…

Biomolecules · Quantitative Biology 2020-03-25 Daniel M. Zuckerman

Templated copying is the central operation by which biology produces complex molecules. Cells copy sequence information from DNA to RNA and on into proteins, which are the molecules responsible for the function and regulation of cellular…

Biological Physics · Physics 2021-04-13 Jenny Poulton

We develop an efficient sampling and free energy calculation technique within the adaptive biasing potential (ABP) framework. By mollifying the density of states we obtain an approximate free energy and an adaptive bias potential that is…

Statistical Mechanics · Physics 2010-01-29 Bradley M. Dickson , Frederic Legoll , Tony Lelievre , Gabriel Stoltz , Paul Fleurat-Lessard

Living systems operate far from thermal equilibrium by converting the chemical potential of ATP into mechanical work to achieve growth, replication or locomotion. Given time series observations of intra-, inter- or multicellular processes,…

Biological Physics · Physics 2021-11-03 Dominic J. Skinner , Jörn Dunkel

The emergence of a body axis is a fundamental step in the development of multicellular organisms. In simple systems such as $\textit{Hydra}$, growing evidence suggests that mechanical forces generated by collective cellular activity play a…

Soft Condensed Matter · Physics 2026-01-09 Arthur Hernandez , Cuncheng Zhu , Luca Giomi

We propose a biochemical model providing the kinetic and energetic descriptions of the processivity dynamics of kinesin and dinein molecular motors. Our approach is a modified version of a well known model describing kinesin dynamics and…

Subcellular Processes · Quantitative Biology 2012-05-17 J. Lopez Alamilla , I. Santamaria-Holek

1. Role of inter-domain water clusters in large-scale dynamics of proteins; 2. Description of large-scale dynamics of proteins based on generalized Stokes-Einstein and Eyring-Polany equation; 3. Dynamic model of protein-ligand complexes…

General Physics · Physics 2007-05-23 Alex Kaivarainen

Molecular motors drive mechanical motions utilizing the free energy liberated from chemical reactions such as ATP hydrolysis. Although it is essential to know the efficiency of this free energy transduction, it has been a challenge due to…

Recently it has been discovered---contrary to expectations of physicists as well as biologists---that the energy transport during photosynthesis, from the chlorophyll pigment that captures the photon to the reaction centre where glucose is…

Quantum Physics · Physics 2015-05-27 Apoorva D. Patel

Photosynthesis converts sunlight into the chemical free energy that feeds the Earth's biosphere, yet at levels much lower than what thermodynamics would allow for. I propose here that photosynthesis is nevertheless thermodynamically…

Atmospheric and Oceanic Physics · Physics 2022-10-18 Axel Kleidon

Cells accomplish diverse functions using the same molecular building blocks, from setting up cytoplasmic flows to generating mechanical forces. In particular, transitions between these non-equilibrium states are triggered by regulating the…

Soft Condensed Matter · Physics 2022-01-03 Bibi Najma , Minu Varghese , Lev Tsidilkovski , Linnea Lemma , Aparna Baskaran , Guillaume Duclos

Energy has always been the driving force in the technological and economic development of societies. The consumption of a significant amount of energy is required to provide basic living conditions of developed countries (heating,…

Chemical Physics · Physics 2017-02-21 Sofoklis Makridis

The process of protein folding from an unfolded state to a biologically active, folded conformation is governed by many parameters e.g the sequence of amino acids, intermolecular interactions, the solvent, temperature and chaperon…

Soft Condensed Matter · Physics 2010-10-19 Pragya Shukla
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