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The transformation of graphs and graph-like structures is ubiquitous in computer science. When a system is described by graph-transformation rules, it is often desirable that the rules are both terminating and confluent so that rule…

Logic in Computer Science · Computer Science 2021-01-07 Graham Campbell , Detlef Plump

Graph transformation formalisms have proven to be suitable tools for the modelling of chemical reactions. They are well established in theoretical studies and increasingly also in practical applications in chemistry. The latter is made…

Discrete Mathematics · Computer Science 2022-08-29 Jakob L. Andersen , Rolf Fagerberg , Juri Kolčák , Christophe V. F. P. Laurent , Daniel Merkle , Nikolai Nøjgaard

The criteria for determining graph isomorphism are crucial for solving graph isomorphism problems. The necessary condition is that two isomorphic graphs possess invariants, but their function can only be used to filtrate and subdivide…

Graphics · Computer Science 2025-08-19 Chuanfu Hu , Aimin Hou

We present a new general theory of function-based hypergraph transformations on finite families of finite hypergraphs. A function-based hypergraph transformation formalises the action of structurally modifying hypergraphs from a family in a…

Combinatorics · Mathematics 2023-09-26 Sean Trinity Vittadello

Simultaneous embedding is concerned with simultaneously representing a series of graphs sharing some or all vertices. This forms the basis for the visualization of dynamic graphs and thus is an important field of research. Recently there…

Data Structures and Algorithms · Computer Science 2015-06-22 Thomas Bläsius , Stephen G. Kobourov , Ignaz Rutter

Subgraph reconfiguration is a family of problems focusing on the reachability of the solution space in which feasible solutions are subgraphs, represented either as sets of vertices or sets of edges, satisfying a prescribed graph structure…

Data Structures and Algorithms · Computer Science 2018-03-19 Tesshu Hanaka , Takehiro Ito , Haruka Mizuta , Benjamin Moore , Naomi Nishimura , Vijay Subramanya , Akira Suzuki , Krishna Vaidyanathan

The abundance of interconnected data has fueled the design and implementation of graph generators reproducing real-world linking properties, or gauging the effectiveness of graph algorithms, techniques and applications manipulating these…

Databases · Computer Science 2020-01-23 Angela Bonifati , Irena Holubová , Arnau Prat-Pérez , Sherif Sakr

Recently, transformer architectures for graphs emerged as an alternative to established techniques for machine learning with graphs, such as (message-passing) graph neural networks. So far, they have shown promising empirical results, e.g.,…

Machine Learning · Computer Science 2024-04-01 Luis Müller , Mikhail Galkin , Christopher Morris , Ladislav Rampášek

Graph rewiring has emerged as a key technique to alleviate over-squashing in Graph Neural Networks (GNNs) and Graph Transformers by modifying the graph topology to improve information flow. While effective, rewiring inherently alters the…

Machine Learning · Computer Science 2025-10-24 Alexandre Benoit , Catherine Aitken , Yu He

Graph-level contrastive learning, aiming to learn the representations for each graph by contrasting two augmented graphs, has attracted considerable attention. Previous studies usually simply assume that a graph and its augmented graph as a…

Artificial Intelligence · Computer Science 2024-04-15 Yanbei Liu , Yu Zhao , Xiao Wang , Lei Geng , Zhitao Xiao

Graph pattern matching is a routine process for a wide variety of applications such as social network analysis. It is typically defined in terms of subgraph isomorphism which is NP-Complete. To lower its complexity, many extensions of graph…

Databases · Computer Science 2018-04-13 Houari Mahfoud

Graph embedding aims at learning a vector-based representation of vertices that incorporates the structure of the graph. This representation then enables inference of graph properties. Existing graph embedding techniques, however, do not…

Random intersection graphs model networks with communities, assuming an underlying bipartite structure of groups and individuals, where these groups may overlap. Group memberships are generated through the bipartite configuration model.…

Probability · Mathematics 2026-01-14 Remco van der Hofstad , Julia Komjathy , Viktoria Vadon

Graph matching consists of aligning the vertices of two unlabeled graphs in order to maximize the shared structure across networks; when the graphs are unipartite, this is commonly formulated as minimizing their edge disagreements. In this…

Machine Learning · Statistics 2021-04-13 Jesús Arroyo , Carey E. Priebe , Vince Lyzinski

We extend the concept of graph isomorphisms to multilayer networks with any number of "aspects" (i.e., types of layering). In developing this generalization, we identify multiple types of isomorphisms. For example, in multilayer networks…

Physics and Society · Physics 2017-02-17 Mikko Kivelä , Mason A. Porter

What does it mean for an algebraic rewrite rule to subsume another rule (that may then be called a subrule)? We view subsumptions as rule morphisms such that the simultaneous application of a rule and a subrule (i.e. the application of a…

Logic in Computer Science · Computer Science 2023-12-22 Thierry Boy de la Tour

More and more large data collections are gathered worldwide in various IT systems. Many of them possess the networked nature and need to be processed and analysed as graph structures. Due to their size they require very often usage of…

Distributed, Parallel, and Cluster Computing · Computer Science 2013-06-04 Tomasz Kajdanowicz , Przemyslaw Kazienko , Wojciech Indyk

We demonstrate that graph-based models are fully capable of representing higher-order interactions, and have a long history of being used for precisely this purpose. This stands in contrast to a common claim in the recent literature on…

Physics and Society · Physics 2026-02-20 Tiago P. Peixoto , Leto Peel , Thilo Gross , Manlio De Domenico

Modern methods of graph theory describe a graph up to isomorphism, which makes it difficult to create mathematical models for visualizing graph drawings on a plane. The topological drawing of the planar part of a graph allows representing…

Combinatorics · Mathematics 2024-08-01 Sergey Kurapov , Maxim Davidovsky

Given a graph $G$, a vertex switch of $v \in V(G)$ results in a new graph where neighbors of $v$ become nonneighbors and vice versa. This operation gives rise to an equivalence relation over the set of labeled digraphs on $n$ vertices. The…

Data Structures and Algorithms · Computer Science 2014-08-22 Nathan Lindzey